Tunable Resistive Pulse Sensing results from the isolation of extracellular microvesicles in comparison with the theoretical model

2022
research data
data set
cris.lastimport.wos2024-04-09T19:22:11Z
dc.abstract.enExtracellular vesicles (EVs) are heterogeneous 30-5000 nm membrane vesicles that transport proteins, non-coding RNAs (miRNAs), lipids and metabolites. Major populations include exosomes, ectosomes and apoptotic bodies. The aim of this work was to compare the distribution of EVs obtained under different conditions of differential centrifugation, including ultracentrifugation, with the results developed on the basis of a theoretical model. This is data set to the article submitted to the journal Bio-Algorithms and Med-Systems (BAMS).pl
dc.abstract.plPęcherzyki zewnątrzkomórkowe (EV) to zróżnicowane pęcherzyki błonowe o średnicy 30-5000 nm, które transportują białka, niekodujące RNA (miRNA), lipidy i metabolity. Główne populacje obejmują egzosomy, ektosomy i ciała apoptotyczne. Celem pracy było porównanie rozkładu EV uzyskanych w różnych warunkach wirowania różnicowego, w tym ultrawirowania, z wynikami opracowanymi na podstawie modelu teoretycznego. Jest to zestaw danych do artykułu wysłanego do czasopisma Bio-Algorithms and Med-Systems (BAMS).pl
dc.affiliationWydział Fizyki, Astronomii i Informatyki Stosowanej : Instytut Fizyki im. Mariana Smoluchowskiegopl
dc.contributor.authorStępień, Ewa - 161583 pl
dc.contributor.authorDurak-Kozica, Martyna - 148761 pl
dc.contributor.authorWróbel, Andrzej - 132782 pl
dc.contributor.authorPlatt, Markpl
dc.contributor.institutionM. Smoluchowski Institute of Physics, Jagiellonian University, Kraków, Polandpl
dc.contributor.institutionDepartment of Chemistry, Loughborough University, Loughborough, United Kingdompl
dc.coverage.temporal2015-09-22 – 2018-09-21pl
dc.date.accessioned2022-12-13T15:17:12Z
dc.date.available2022-12-13T15:17:12Z
dc.date.issued2022pl
dc.description.additionalThe data include the size distribution and concentration of EVs were measured by TRPS technology using the qNano system (Izon Science Ltd.,. Oxford,. UK). The instrument was calibrated using CPC100 and CPC200 calibration particles (Izon Science) according to the manufacturer’s instructions. Exosomes were measured using NP100 nanopores (analysis range 50-330 nm; Izon Science) at a pressure of 5 mbar. Ectosomes were measured using NP200 nanopores (analysis range 85-500 nm; Izon Science) with a pressure of 1 mbar. Voltage and stretch were adjusted to obtain a stable current between 100-120 nA. The samples were analyzed for 3 minutes or until the measurement was performed on 500 objects. Data processing and analysis were prepared on the Izon Control Suite v2.2 software (Izon Science).pl
dc.description.additional4 - Łączna liczba autorów publikacjipl
dc.description.grantnumber2014/15/N/NZ5/01606pl
dc.description.grantnumberFlagship Project Center For Theranosticspl
dc.description.granttitleUdział receptora dla urokinazowego aktywatora plazminogenu w procesie formowania i internalizacji mikrocząstek pochodzenia śródbłonkowego w warunkach hiperglikemii.pl
dc.description.granttitleSciMat and qLife Priority Research Area budget under the Strategic Programme Excellence Initiative at the Jagiellonian Universitypl
dc.description.sponsorshipNarodowe Centrum Nauki (NCN)pl
dc.description.sponsorshipUniwersytet Jagielloński - ID.UJpl
dc.description.versionraw data and analysispl
dc.identifier.doi10.26106/vngy-9551pl
dc.identifier.urihttps://ruj.uj.edu.pl/xmlui/handle/item/304718
dc.languageengpl
dc.pbn.affiliationDziedzina nauk ścisłych i przyrodniczych : nauki fizycznepl
dc.pubinfoKraków : Repozytorium Uniwersytetu Jagiellońskiegopl
dc.rightsUdzielam licencji. Uznanie autorstwa 4.0 Międzynarodowa*
dc.rights.urihttp://creativecommons.org/licenses/by/4.0/legalcode.pl*
dc.subject.enectosomespl
dc.subject.enexosomespl
dc.subject.enendothelial cellspl
dc.subject.endifferential centrifugationpl
dc.subject.enMonte Carlo analysispl
dc.subject.enTRPSpl
dc.subject.ensize distributionpl
dc.subject.plektosomypl
dc.subject.plegzosomypl
dc.subject.plkomórki śródbłonkapl
dc.subject.plwirowanie różnicowepl
dc.subject.planaliza Monte Carlopl
dc.subject.plTRPSpl
dc.subtypeDatasetpl
dc.titleTunable Resistive Pulse Sensing results from the isolation of extracellular microvesicles in comparison with the theoretical modelpl
dc.title.alternativeComparison of TRPS analysis of EVs with a modelpl
dc.typeResearchDatapl
dspace.entity.typePublication
cris.lastimport.wos
2024-04-09T19:22:11Z
dc.abstract.enpl
Extracellular vesicles (EVs) are heterogeneous 30-5000 nm membrane vesicles that transport proteins, non-coding RNAs (miRNAs), lipids and metabolites. Major populations include exosomes, ectosomes and apoptotic bodies. The aim of this work was to compare the distribution of EVs obtained under different conditions of differential centrifugation, including ultracentrifugation, with the results developed on the basis of a theoretical model. This is data set to the article submitted to the journal Bio-Algorithms and Med-Systems (BAMS).
dc.abstract.plpl
Pęcherzyki zewnątrzkomórkowe (EV) to zróżnicowane pęcherzyki błonowe o średnicy 30-5000 nm, które transportują białka, niekodujące RNA (miRNA), lipidy i metabolity. Główne populacje obejmują egzosomy, ektosomy i ciała apoptotyczne. Celem pracy było porównanie rozkładu EV uzyskanych w różnych warunkach wirowania różnicowego, w tym ultrawirowania, z wynikami opracowanymi na podstawie modelu teoretycznego. Jest to zestaw danych do artykułu wysłanego do czasopisma Bio-Algorithms and Med-Systems (BAMS).
dc.affiliationpl
Wydział Fizyki, Astronomii i Informatyki Stosowanej : Instytut Fizyki im. Mariana Smoluchowskiego
dc.contributor.authorpl
Stępień, Ewa - 161583
dc.contributor.authorpl
Durak-Kozica, Martyna - 148761
dc.contributor.authorpl
Wróbel, Andrzej - 132782
dc.contributor.authorpl
Platt, Mark
dc.contributor.institutionpl
M. Smoluchowski Institute of Physics, Jagiellonian University, Kraków, Poland
dc.contributor.institutionpl
Department of Chemistry, Loughborough University, Loughborough, United Kingdom
dc.coverage.temporalpl
2015-09-22 – 2018-09-21
dc.date.accessioned
2022-12-13T15:17:12Z
dc.date.available
2022-12-13T15:17:12Z
dc.date.issuedpl
2022
dc.description.additionalpl
The data include the size distribution and concentration of EVs were measured by TRPS technology using the qNano system (Izon Science Ltd.,. Oxford,. UK). The instrument was calibrated using CPC100 and CPC200 calibration particles (Izon Science) according to the manufacturer’s instructions. Exosomes were measured using NP100 nanopores (analysis range 50-330 nm; Izon Science) at a pressure of 5 mbar. Ectosomes were measured using NP200 nanopores (analysis range 85-500 nm; Izon Science) with a pressure of 1 mbar. Voltage and stretch were adjusted to obtain a stable current between 100-120 nA. The samples were analyzed for 3 minutes or until the measurement was performed on 500 objects. Data processing and analysis were prepared on the Izon Control Suite v2.2 software (Izon Science).
dc.description.additionalpl
4 - Łączna liczba autorów publikacji
dc.description.grantnumberpl
2014/15/N/NZ5/01606
dc.description.grantnumberpl
Flagship Project Center For Theranostics
dc.description.granttitlepl
Udział receptora dla urokinazowego aktywatora plazminogenu w procesie formowania i internalizacji mikrocząstek pochodzenia śródbłonkowego w warunkach hiperglikemii.
dc.description.granttitlepl
SciMat and qLife Priority Research Area budget under the Strategic Programme Excellence Initiative at the Jagiellonian University
dc.description.sponsorshippl
Narodowe Centrum Nauki (NCN)
dc.description.sponsorshippl
Uniwersytet Jagielloński - ID.UJ
dc.description.versionpl
raw data and analysis
dc.identifier.doipl
10.26106/vngy-9551
dc.identifier.uri
https://ruj.uj.edu.pl/xmlui/handle/item/304718
dc.languagepl
eng
dc.pbn.affiliationpl
Dziedzina nauk ścisłych i przyrodniczych : nauki fizyczne
dc.pubinfopl
Kraków : Repozytorium Uniwersytetu Jagiellońskiego
dc.rights*
Udzielam licencji. Uznanie autorstwa 4.0 Międzynarodowa
dc.rights.uri*
http://creativecommons.org/licenses/by/4.0/legalcode.pl
dc.subject.enpl
ectosomes
dc.subject.enpl
exosomes
dc.subject.enpl
endothelial cells
dc.subject.enpl
differential centrifugation
dc.subject.enpl
Monte Carlo analysis
dc.subject.enpl
TRPS
dc.subject.enpl
size distribution
dc.subject.plpl
ektosomy
dc.subject.plpl
egzosomy
dc.subject.plpl
komórki śródbłonka
dc.subject.plpl
wirowanie różnicowe
dc.subject.plpl
analiza Monte Carlo
dc.subject.plpl
TRPS
dc.subtypepl
Dataset
dc.titlepl
Tunable Resistive Pulse Sensing results from the isolation of extracellular microvesicles in comparison with the theoretical model
dc.title.alternativepl
Comparison of TRPS analysis of EVs with a model
dc.typepl
ResearchData
dspace.entity.type
Publication
Affiliations

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Centrifugation conditions description.pdf
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Calculation contamination of pellet with proteins.pdf
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Ekto_MinMax.xlsx
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Egzosomy1.xlsx
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Egzo_MinMax.xlsx
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qNano_NP100_Egzo.xlsx
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qNano_NP100_Ekto.xlsx
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GenClc.f90
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Raw Data Description.docx
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