Segmentation of orbital and periorbital lesions detected in orbital magnetic resonance imaging by deep learning method

2022
journal article
article
1
dc.abstract.enPurpose: Magnetic resonance imaging (MRI) has a special place in the evaluation of orbital and periorbital lesions. Segmentation is one of the deep learning methods. In this study, we aimed to perform segmentation in orbital and periorbital lesions. Material and methods: Contrast-enhanced orbital MRIs performed between 2010 and 2019 were retrospectively screened, and 302 cross-sections of contrast-enhanced, fat-suppressed, T1-weighted, axial MRI images of 95 patients obtained using 3 T and 1.5 T devices were included in the study. The dataset was divided into 3: training, test, and validation. The number of training and validation data was increased 4 times by applying data augmentation (horizontal, vertical, and both). Pytorch UNet was used for training, with 100 epochs. The intersection over union (IOU) statistic (the Jaccard index) was selected as 50%, and the results were calculated. Results: The 77th epoch model provided the best results: true positives, 23; false positives, 4; and false negatives, 8. The precision, sensitivity, and F1 score were determined as 0.85, 0.74, and 0.79, respectively. Conclusions: Our study proved to be successful in segmentation by deep learning method. It is one of the pioneering studies on this subject and will shed light on further segmentation studies to be performed in orbital MR images.pl
dc.contributor.authorAydin, Nevinpl
dc.contributor.authorSaylisoy, Suzanpl
dc.contributor.authorCelik, Ozerpl
dc.contributor.authorAslan, Ahmet Farukpl
dc.contributor.authorOdabas, Alperpl
dc.date.accessioned2023-04-12T06:09:06Z
dc.date.available2023-04-12T06:09:06Z
dc.date.issued2022pl
dc.date.openaccess0
dc.description.accesstimew momencie opublikowania
dc.description.additionalBibliogr. s. e520pl
dc.description.physicale516-e520pl
dc.description.versionostateczna wersja wydawcy
dc.description.volume87pl
dc.identifier.doi10.5114/pjr.2022.119808pl
dc.identifier.eissn1899-0967pl
dc.identifier.issn1733-134Xpl
dc.identifier.urihttps://ruj.uj.edu.pl/xmlui/handle/item/310239
dc.languageengpl
dc.language.containerengpl
dc.rightsUdzielam licencji. Uznanie autorstwa - Użycie niekomercyjne - Bez utworów zależnych 4.0 Międzynarodowa*
dc.rights.licenceCC-BY-NC-ND
dc.rights.urihttp://creativecommons.org/licenses/by-nc-nd/4.0/legalcode.pl*
dc.share.typeotwarte czasopismo
dc.subject.endeep learningpl
dc.subject.enorbital lesionspl
dc.subject.enorbital MRIpl
dc.subject.enperiorbital lesionspl
dc.subject.ensegmentationpl
dc.subtypeArticlepl
dc.titleSegmentation of orbital and periorbital lesions detected in orbital magnetic resonance imaging by deep learning methodpl
dc.title.journalPolish Journal of Radiologypl
dc.typeJournalArticlepl
dspace.entity.typePublication
dc.abstract.enpl
Purpose: Magnetic resonance imaging (MRI) has a special place in the evaluation of orbital and periorbital lesions. Segmentation is one of the deep learning methods. In this study, we aimed to perform segmentation in orbital and periorbital lesions. Material and methods: Contrast-enhanced orbital MRIs performed between 2010 and 2019 were retrospectively screened, and 302 cross-sections of contrast-enhanced, fat-suppressed, T1-weighted, axial MRI images of 95 patients obtained using 3 T and 1.5 T devices were included in the study. The dataset was divided into 3: training, test, and validation. The number of training and validation data was increased 4 times by applying data augmentation (horizontal, vertical, and both). Pytorch UNet was used for training, with 100 epochs. The intersection over union (IOU) statistic (the Jaccard index) was selected as 50%, and the results were calculated. Results: The 77th epoch model provided the best results: true positives, 23; false positives, 4; and false negatives, 8. The precision, sensitivity, and F1 score were determined as 0.85, 0.74, and 0.79, respectively. Conclusions: Our study proved to be successful in segmentation by deep learning method. It is one of the pioneering studies on this subject and will shed light on further segmentation studies to be performed in orbital MR images.
dc.contributor.authorpl
Aydin, Nevin
dc.contributor.authorpl
Saylisoy, Suzan
dc.contributor.authorpl
Celik, Ozer
dc.contributor.authorpl
Aslan, Ahmet Faruk
dc.contributor.authorpl
Odabas, Alper
dc.date.accessioned
2023-04-12T06:09:06Z
dc.date.available
2023-04-12T06:09:06Z
dc.date.issuedpl
2022
dc.date.openaccess
0
dc.description.accesstime
w momencie opublikowania
dc.description.additionalpl
Bibliogr. s. e520
dc.description.physicalpl
e516-e520
dc.description.version
ostateczna wersja wydawcy
dc.description.volumepl
87
dc.identifier.doipl
10.5114/pjr.2022.119808
dc.identifier.eissnpl
1899-0967
dc.identifier.issnpl
1733-134X
dc.identifier.uri
https://ruj.uj.edu.pl/xmlui/handle/item/310239
dc.languagepl
eng
dc.language.containerpl
eng
dc.rights*
Udzielam licencji. Uznanie autorstwa - Użycie niekomercyjne - Bez utworów zależnych 4.0 Międzynarodowa
dc.rights.licence
CC-BY-NC-ND
dc.rights.uri*
http://creativecommons.org/licenses/by-nc-nd/4.0/legalcode.pl
dc.share.type
otwarte czasopismo
dc.subject.enpl
deep learning
dc.subject.enpl
orbital lesions
dc.subject.enpl
orbital MRI
dc.subject.enpl
periorbital lesions
dc.subject.enpl
segmentation
dc.subtypepl
Article
dc.titlepl
Segmentation of orbital and periorbital lesions detected in orbital magnetic resonance imaging by deep learning method
dc.title.journalpl
Polish Journal of Radiology
dc.typepl
JournalArticle
dspace.entity.type
Publication
Affiliations

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