Proteomic profiling of exosomes derived from pancreatic beta-cells cultured under hyperglycemia

2022
journal article
article
4
cris.lastimport.wos2024-04-09T20:18:22Z
dc.abstract.enIntroduction: Cargo carried by extracellular vesicles (EVs) is considered a promising diagnostic marker, especially proteins. EVs can be divided according to their size and way of biogenesis into exosomes (diameter < 200 nm) and ectosomes (diameter > 200 nm). Exosomes are considered to be of endocytic origin, and ectosomes are produced by budding and shedding from the plasma membrane [1]. Methods: The first step of this study was a characterization of the exosome sample. Using Tunable Resistive Pulse Sensing (qNano) size distribution and concentration were measured. The mean size of exosomes was 120±9.17 nm. In the present study, a nano liquid chromatography coupled with tandem mass spectrometry (nanoLC-MS/MS) was used to compare protein profiles of exosomes secreted by pancreatic beta cells (1.1B4) grown under normal glucose (NG, 5 mM D-glucose) and high glucose (HG, 25 mM D-glucose) conditions. The EV samples were lysed, and proteins were denatured, digested, and analyzed using a Q-Exactive mass spectrometer coupled with the UltiMate 3000 RSLC nano system. The nanoLC-MS/MS data were searched against the SwissProt Homo sapiens database using MaxQuant software and protein quantitation was done by the MaxLFQ algorithm. Statistical analysis was carried out with Perseus software. Further bioinformatic analysis was performed using the FunRich 3.1.4 software with the UniProt protein database and String [2]. Results: As a result of the nanoLC-MS/MS analysis more than 1,000 proteins were identified and quantified in each sample. The average number of identified proteins in exosomes was 1,397. Label-free quantitative analysis showed that exosome composition differed significantly between those isolated under NG and HG conditions. Many pathways were down-regulated in HG, particularly the ubiquitin-proteasome pathway. In addition, a significant up-regulation of the Ras-proteins pathway was observed in HG. Conclusion: Our description of exosomes protein content and its related functions provides the first insight into the EV interactome and its role in glucose intolerance development and diabetic complications. The results also indicate the applicability of EV proteins for further investigation regarding their potential as circulating in vivo biomarkers.pl
dc.affiliationWydział Fizyki, Astronomii i Informatyki Stosowanej : Instytut Fizyki im. Mariana Smoluchowskiegopl
dc.affiliationPion Prorektora ds. badań naukowych : Małopolskie Centrum Biotechnologiipl
dc.affiliationSzkoła Doktorska Nauk Ścisłych i Przyrodniczychpl
dc.contributor.authorRząca, Carina - 263452 pl
dc.contributor.authorJankowska, Urszula - 103969 pl
dc.contributor.authorStępień, Ewa - 161583 pl
dc.date.accessioned2023-01-13T12:00:24Z
dc.date.available2023-01-13T12:00:24Z
dc.date.issued2022pl
dc.date.openaccess0
dc.description.accesstimew momencie opublikowania
dc.description.number1pl
dc.description.physical151-157pl
dc.description.versionostateczna wersja wydawcy
dc.description.volume18pl
dc.identifier.doi10.2478/bioal-2022-0085pl
dc.identifier.eissn1896-530Xpl
dc.identifier.issn1895-9091pl
dc.identifier.urihttps://ruj.uj.edu.pl/xmlui/handle/item/305994
dc.languageengpl
dc.language.containerengpl
dc.rightsUdzielam licencji. Uznanie autorstwa - Na tych samych warunkach 4.0 Międzynarodowa*
dc.rights.licenceCC-BY-SA
dc.rights.urihttp://creativecommons.org/licenses/by-sa/4.0/legalcode.pl*
dc.share.typeotwarte czasopismo
dc.subject.enproteomicpl
dc.subject.enexosomespl
dc.subject.enhyperglycemiapl
dc.subject.enmass spectrometrypl
dc.subtypeArticlepl
dc.titleProteomic profiling of exosomes derived from pancreatic beta-cells cultured under hyperglycemiapl
dc.title.journalBio-Algorithms and Med-Systemspl
dc.typeJournalArticlepl
dspace.entity.typePublication
cris.lastimport.wos
2024-04-09T20:18:22Z
dc.abstract.enpl
Introduction: Cargo carried by extracellular vesicles (EVs) is considered a promising diagnostic marker, especially proteins. EVs can be divided according to their size and way of biogenesis into exosomes (diameter < 200 nm) and ectosomes (diameter > 200 nm). Exosomes are considered to be of endocytic origin, and ectosomes are produced by budding and shedding from the plasma membrane [1]. Methods: The first step of this study was a characterization of the exosome sample. Using Tunable Resistive Pulse Sensing (qNano) size distribution and concentration were measured. The mean size of exosomes was 120±9.17 nm. In the present study, a nano liquid chromatography coupled with tandem mass spectrometry (nanoLC-MS/MS) was used to compare protein profiles of exosomes secreted by pancreatic beta cells (1.1B4) grown under normal glucose (NG, 5 mM D-glucose) and high glucose (HG, 25 mM D-glucose) conditions. The EV samples were lysed, and proteins were denatured, digested, and analyzed using a Q-Exactive mass spectrometer coupled with the UltiMate 3000 RSLC nano system. The nanoLC-MS/MS data were searched against the SwissProt Homo sapiens database using MaxQuant software and protein quantitation was done by the MaxLFQ algorithm. Statistical analysis was carried out with Perseus software. Further bioinformatic analysis was performed using the FunRich 3.1.4 software with the UniProt protein database and String [2]. Results: As a result of the nanoLC-MS/MS analysis more than 1,000 proteins were identified and quantified in each sample. The average number of identified proteins in exosomes was 1,397. Label-free quantitative analysis showed that exosome composition differed significantly between those isolated under NG and HG conditions. Many pathways were down-regulated in HG, particularly the ubiquitin-proteasome pathway. In addition, a significant up-regulation of the Ras-proteins pathway was observed in HG. Conclusion: Our description of exosomes protein content and its related functions provides the first insight into the EV interactome and its role in glucose intolerance development and diabetic complications. The results also indicate the applicability of EV proteins for further investigation regarding their potential as circulating in vivo biomarkers.
dc.affiliationpl
Wydział Fizyki, Astronomii i Informatyki Stosowanej : Instytut Fizyki im. Mariana Smoluchowskiego
dc.affiliationpl
Pion Prorektora ds. badań naukowych : Małopolskie Centrum Biotechnologii
dc.affiliationpl
Szkoła Doktorska Nauk Ścisłych i Przyrodniczych
dc.contributor.authorpl
Rząca, Carina - 263452
dc.contributor.authorpl
Jankowska, Urszula - 103969
dc.contributor.authorpl
Stępień, Ewa - 161583
dc.date.accessioned
2023-01-13T12:00:24Z
dc.date.available
2023-01-13T12:00:24Z
dc.date.issuedpl
2022
dc.date.openaccess
0
dc.description.accesstime
w momencie opublikowania
dc.description.numberpl
1
dc.description.physicalpl
151-157
dc.description.version
ostateczna wersja wydawcy
dc.description.volumepl
18
dc.identifier.doipl
10.2478/bioal-2022-0085
dc.identifier.eissnpl
1896-530X
dc.identifier.issnpl
1895-9091
dc.identifier.uri
https://ruj.uj.edu.pl/xmlui/handle/item/305994
dc.languagepl
eng
dc.language.containerpl
eng
dc.rights*
Udzielam licencji. Uznanie autorstwa - Na tych samych warunkach 4.0 Międzynarodowa
dc.rights.licence
CC-BY-SA
dc.rights.uri*
http://creativecommons.org/licenses/by-sa/4.0/legalcode.pl
dc.share.type
otwarte czasopismo
dc.subject.enpl
proteomic
dc.subject.enpl
exosomes
dc.subject.enpl
hyperglycemia
dc.subject.enpl
mass spectrometry
dc.subtypepl
Article
dc.titlepl
Proteomic profiling of exosomes derived from pancreatic beta-cells cultured under hyperglycemia
dc.title.journalpl
Bio-Algorithms and Med-Systems
dc.typepl
JournalArticle
dspace.entity.type
Publication
Affiliations

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