Advances in cryo-electron microscopy (cryoEM) for structure-based drug discovery

2025
journal article
review article
8
dc.abstract.enIntroduction: Macromolecular X-ray crystallography (XRC), nuclear magnetic resonance (NMR), and cryo-electron microscopy (cryoEM) are the primary techniques for determining atomic-level, three-dimensional structures of macromolecules essential for drug discovery. With advancements in artificial intelligence (AI) and cryoEM, the Protein Data Bank (PDB) is solidifying its role as a key resource for 3D macromolecular structures. These developments underscore the growing need for enhanced quality metrics and robust validation standards for experimental structures. Areas covered: This review examines recent advancements in cryoEM for drug discovery, analyzing structure quality metrics, resolution improvements, metal-ligand and water molecule identification, and refinement software. It compares cryoEM with other techniques like XRC and NMR, emphasizing the global expansion of cryoEM facilities and its increasing significance in drug discovery. Expert opinion: CryoEM is revolutionizing structural biology and drug discovery, particularly for large, complex structures in induced proximity and antibody-antigen interactions. It supports vaccine design, CAR T-cell optimization, gene editing, and gene therapy. Combined with AI, cryoEM enhances particle identification and 3D structure determination. With recent breakthroughs, cryoEM is emerging as a crucial tool in drug discovery, driving the development of new, effective therapies
dc.affiliationWydział Biochemii, Biofizyki i Biotechnologii : Zakład Biofizyki Obliczeniowej i Bioinformatyki
dc.affiliationSzkoła Doktorska Nauk Ścisłych i Przyrodniczych
dc.contributor.authorRubach, Pawel
dc.contributor.authorMajorek, Karolina A.
dc.contributor.authorGucwa, Michał - 259842
dc.contributor.authorMurzyn, Krzysztof - 130817
dc.contributor.authorWlodawer, Alexander
dc.contributor.authorMinor, Wladek
dc.date.accessioned2025-12-19T11:09:55Z
dc.date.available2025-12-19T11:09:55Z
dc.date.createdat2025-12-17T10:01:36Zen
dc.date.issued2025
dc.description.additionalBibliogr.
dc.description.number2
dc.description.physical163-176
dc.description.volume20
dc.identifier.doi10.1080/17460441.2025.2450636
dc.identifier.eissn1746-045X
dc.identifier.issn1746-0441
dc.identifier.urihttps://ruj.uj.edu.pl/handle/item/567947
dc.languageeng
dc.language.containereng
dc.rightsDodaję tylko opis bibliograficzny
dc.rights.licenceBez licencji otwartego dostępu
dc.source.integratorfalse
dc.subject.encryo-electron microscopy
dc.subject.endrug discovery
dc.subject.enartificial intelligence
dc.subject.enmachine learning
dc.subject.enstructure validation
dc.subject.enquality metric
dc.subtypeReviewArticle
dc.titleAdvances in cryo-electron microscopy (cryoEM) for structure-based drug discovery
dc.title.journalExpert Opinion on Drug Discovery
dc.typeJournalArticle
dspace.entity.typePublicationen
dc.abstract.en
Introduction: Macromolecular X-ray crystallography (XRC), nuclear magnetic resonance (NMR), and cryo-electron microscopy (cryoEM) are the primary techniques for determining atomic-level, three-dimensional structures of macromolecules essential for drug discovery. With advancements in artificial intelligence (AI) and cryoEM, the Protein Data Bank (PDB) is solidifying its role as a key resource for 3D macromolecular structures. These developments underscore the growing need for enhanced quality metrics and robust validation standards for experimental structures. Areas covered: This review examines recent advancements in cryoEM for drug discovery, analyzing structure quality metrics, resolution improvements, metal-ligand and water molecule identification, and refinement software. It compares cryoEM with other techniques like XRC and NMR, emphasizing the global expansion of cryoEM facilities and its increasing significance in drug discovery. Expert opinion: CryoEM is revolutionizing structural biology and drug discovery, particularly for large, complex structures in induced proximity and antibody-antigen interactions. It supports vaccine design, CAR T-cell optimization, gene editing, and gene therapy. Combined with AI, cryoEM enhances particle identification and 3D structure determination. With recent breakthroughs, cryoEM is emerging as a crucial tool in drug discovery, driving the development of new, effective therapies
dc.affiliation
Wydział Biochemii, Biofizyki i Biotechnologii : Zakład Biofizyki Obliczeniowej i Bioinformatyki
dc.affiliation
Szkoła Doktorska Nauk Ścisłych i Przyrodniczych
dc.contributor.author
Rubach, Pawel
dc.contributor.author
Majorek, Karolina A.
dc.contributor.author
Gucwa, Michał - 259842
dc.contributor.author
Murzyn, Krzysztof - 130817
dc.contributor.author
Wlodawer, Alexander
dc.contributor.author
Minor, Wladek
dc.date.accessioned
2025-12-19T11:09:55Z
dc.date.available
2025-12-19T11:09:55Z
dc.date.createdaten
2025-12-17T10:01:36Z
dc.date.issued
2025
dc.description.additional
Bibliogr.
dc.description.number
2
dc.description.physical
163-176
dc.description.volume
20
dc.identifier.doi
10.1080/17460441.2025.2450636
dc.identifier.eissn
1746-045X
dc.identifier.issn
1746-0441
dc.identifier.uri
https://ruj.uj.edu.pl/handle/item/567947
dc.language
eng
dc.language.container
eng
dc.rights
Dodaję tylko opis bibliograficzny
dc.rights.licence
Bez licencji otwartego dostępu
dc.source.integrator
false
dc.subject.en
cryo-electron microscopy
dc.subject.en
drug discovery
dc.subject.en
artificial intelligence
dc.subject.en
machine learning
dc.subject.en
structure validation
dc.subject.en
quality metric
dc.subtype
ReviewArticle
dc.title
Advances in cryo-electron microscopy (cryoEM) for structure-based drug discovery
dc.title.journal
Expert Opinion on Drug Discovery
dc.type
JournalArticle
dspace.entity.typeen
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