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The genome assembly and annotation of the cricket Gryllus longicercus
Journal
Scientific data
140
Author
Szrajer Szymon
Gray David
Ylla Bou Guillem
Volume
11
Article ID
708
eISSN
2052-4463
Access date
2024-06-28
Remarks
Bibliogr. Guillem Ylla Bou podpisany: Guillem Ylla
Language
English
Journal language
English
Abstract in English
The order Orthoptera includes insects such as grasshoppers, katydids, and crickets, among which there are important species for ecosystem stability and pollination, as well as research organisms in different fields such as neurobiology, ecology, and evolution. Crickets, with more than 2,400 described species, are emerging as novel model research organisms, for their diversity, worldwide distribution, regeneration capacity, and their characteristic acoustic communication. Here we report the assembly and annotation of the first New World cricket, that of Gryllus longicercus Weissman & Gray 2019. The genome assembly, generated by combining 44.54 Gb of long reads from PacBio and 120.44 Gb of short Illumina reads, has a length of 1.85 Gb. The genome annotation yielded 19,715 transcripts from 14,789 gene models.
Affiliation
Wydział Biochemii, Biofizyki i Biotechnologii : Pracownia Bioinformatyki i Biologii Genomu
| dc.abstract.en | The order Orthoptera includes insects such as grasshoppers, katydids, and crickets, among which there are important species for ecosystem stability and pollination, as well as research organisms in different fields such as neurobiology, ecology, and evolution. Crickets, with more than 2,400 described species, are emerging as novel model research organisms, for their diversity, worldwide distribution, regeneration capacity, and their characteristic acoustic communication. Here we report the assembly and annotation of the first New World cricket, that of Gryllus longicercus Weissman & Gray 2019. The genome assembly, generated by combining 44.54 Gb of long reads from PacBio and 120.44 Gb of short Illumina reads, has a length of 1.85 Gb. The genome annotation yielded 19,715 transcripts from 14,789 gene models. | |
| dc.affiliation | Wydział Biochemii, Biofizyki i Biotechnologii : Pracownia Bioinformatyki i Biologii Genomu | |
| dc.contributor.author | Szrajer, Szymon | |
| dc.contributor.author | Gray, David | |
| dc.contributor.author | Ylla Bou, Guillem - 460894 | |
| dc.date.accession | 2024-06-28 | |
| dc.date.accessioned | 2024-06-28T12:57:09Z | |
| dc.date.available | 2024-06-28T12:57:09Z | |
| dc.date.issued | 2024 | |
| dc.date.openaccess | 0 | |
| dc.description.accesstime | w momencie opublikowania | |
| dc.description.additional | Bibliogr. Guillem Ylla Bou podpisany: Guillem Ylla | |
| dc.description.version | ostateczna wersja wydawcy | |
| dc.description.volume | 11 | |
| dc.identifier.articleid | 708 | |
| dc.identifier.doi | 10.1038/s41597-024-03554-z | |
| dc.identifier.eissn | 2052-4463 | |
| dc.identifier.uri | https://ruj.uj.edu.pl/handle/item/362349 | |
| dc.language | eng | |
| dc.language.container | eng | |
| dc.rights | Udzielam licencji. Uznanie autorstwa 4.0 Międzynarodowa | |
| dc.rights.licence | CC-BY | |
| dc.rights.uri | http://creativecommons.org/licenses/by/4.0/legalcode.pl | |
| dc.share.type | otwarte czasopismo | |
| dc.subtype | Article | |
| dc.title | The genome assembly and annotation of the cricket Gryllus longicercus | |
| dc.title.journal | Scientific data | |
| dc.type | JournalArticle | |
| dspace.entity.type | Publication | en |
dc.abstract.en
The order Orthoptera includes insects such as grasshoppers, katydids, and crickets, among which there are important species for ecosystem stability and pollination, as well as research organisms in different fields such as neurobiology, ecology, and evolution. Crickets, with more than 2,400 described species, are emerging as novel model research organisms, for their diversity, worldwide distribution, regeneration capacity, and their characteristic acoustic communication. Here we report the assembly and annotation of the first New World cricket, that of Gryllus longicercus Weissman & Gray 2019. The genome assembly, generated by combining 44.54 Gb of long reads from PacBio and 120.44 Gb of short Illumina reads, has a length of 1.85 Gb. The genome annotation yielded 19,715 transcripts from 14,789 gene models. dc.affiliation
Wydział Biochemii, Biofizyki i Biotechnologii : Pracownia Bioinformatyki i Biologii Genomu dc.contributor.author
Szrajer, Szymon dc.contributor.author
Gray, David dc.contributor.author
Ylla Bou, Guillem - 460894 dc.date.accession
2024-06-28 dc.date.accessioned
2024-06-28T12:57:09Z dc.date.available
2024-06-28T12:57:09Z dc.date.issued
2024 dc.date.openaccess
0 dc.description.accesstime
w momencie opublikowania dc.description.additional
Bibliogr. Guillem Ylla Bou podpisany: Guillem Ylla dc.description.version
ostateczna wersja wydawcy dc.description.volume
11 dc.identifier.articleid
708 dc.identifier.doi
10.1038/s41597-024-03554-z dc.identifier.eissn
2052-4463 dc.identifier.uri
https://ruj.uj.edu.pl/handle/item/362349 dc.language
eng dc.language.container
eng dc.rights
Udzielam licencji. Uznanie autorstwa 4.0 Międzynarodowa dc.rights.licence
CC-BY dc.rights.uri
http://creativecommons.org/licenses/by/4.0/legalcode.pl dc.share.type
otwarte czasopismo dc.subtype
Article dc.title
The genome assembly and annotation of the cricket Gryllus longicercus dc.title.journal
Scientific data dc.type
JournalArticle dspace.entity.typeen
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