Auto-segmentation of head and neck tumors in positron emission tomography images using non-local means and morphological frameworks

2023
journal article
article
30
dc.abstract.enPurpose: Accurately segmenting head and neck cancer (HNC) tumors in medical images is crucial for effective treatment planning. However, current methods for HNC segmentation are limited in their accuracy and efficiency. The present study aimed to design a model for segmenting HNC tumors in three-dimensional (3D) positron emission tomography (PET) images using Non-Local Means (NLM) and morphological operations. Material and Methods: The proposed model was tested using data from the HECKTOR challenge public dataset, which included 408 patient images with HNC tumors. NLM was utilized for image noise reduction and preservation of critical image information. Following pre-processing, morphological operations were used to assess the similarity of intensity and edge information within the images. The Dice score, Intersection Over Union (IoU), and accuracy were used to evaluate the manual and predicted segmentation results. Results: The proposed model achieved an average Dice score of 81.47 ± 3.15, IoU of 80 ± 4.5, and accuracy of 94.03 ± 4.44, demonstrating its effectiveness in segmenting HNC tumors in PET images. Conclusions: The proposed algorithm provides the capability to produce patient-specific tumor segmentation without manual interaction, addressing the limitations of current methods for HNC segmentation. The model has the potential to improve treatment planning and aid in the development of personalized medicine. Additionally, this model can be extended to effectively segment other organs from limited annotated medical images.
dc.contributor.authorHeydarheydari, Sahel
dc.contributor.authorBirgani, Mohammad Javad Tahmasebi
dc.contributor.authorRezaeijo, Seyed Masoud
dc.date.accessioned2024-07-22T10:59:43Z
dc.date.available2024-07-22T10:59:43Z
dc.date.issued2023
dc.date.openaccess0
dc.description.accesstimew momencie opublikowania
dc.description.additionalBibliogr. s. e370
dc.description.physicale365-e370
dc.description.versionostateczna wersja wydawcy
dc.description.volume88
dc.identifier.doi10.5114/pjr.2023.130815
dc.identifier.issn1733-134X
dc.identifier.urihttps://ruj.uj.edu.pl/handle/item/388802
dc.languageeng
dc.language.containereng
dc.rightsUdzielam licencji. Uznanie autorstwa - Użycie niekomercyjne - Bez utworów zależnych 4.0 Międzynarodowa
dc.rights.licenceCC-BY-NC-ND
dc.rights.urihttp://creativecommons.org/licenses/by-nc-nd/4.0/legalcode.pl
dc.share.typeotwarte czasopismo
dc.subject.enauto-segmentation
dc.subject.enhead and neck tumor
dc.subject.enmorphological
dc.subject.enPET images
dc.subtypeArticle
dc.titleAuto-segmentation of head and neck tumors in positron emission tomography images using non-local means and morphological frameworks
dc.title.journalPolish Journal of Radiology
dc.typeJournalArticle
dspace.entity.typePublicationen
dc.abstract.en
Purpose: Accurately segmenting head and neck cancer (HNC) tumors in medical images is crucial for effective treatment planning. However, current methods for HNC segmentation are limited in their accuracy and efficiency. The present study aimed to design a model for segmenting HNC tumors in three-dimensional (3D) positron emission tomography (PET) images using Non-Local Means (NLM) and morphological operations. Material and Methods: The proposed model was tested using data from the HECKTOR challenge public dataset, which included 408 patient images with HNC tumors. NLM was utilized for image noise reduction and preservation of critical image information. Following pre-processing, morphological operations were used to assess the similarity of intensity and edge information within the images. The Dice score, Intersection Over Union (IoU), and accuracy were used to evaluate the manual and predicted segmentation results. Results: The proposed model achieved an average Dice score of 81.47 ± 3.15, IoU of 80 ± 4.5, and accuracy of 94.03 ± 4.44, demonstrating its effectiveness in segmenting HNC tumors in PET images. Conclusions: The proposed algorithm provides the capability to produce patient-specific tumor segmentation without manual interaction, addressing the limitations of current methods for HNC segmentation. The model has the potential to improve treatment planning and aid in the development of personalized medicine. Additionally, this model can be extended to effectively segment other organs from limited annotated medical images.
dc.contributor.author
Heydarheydari, Sahel
dc.contributor.author
Birgani, Mohammad Javad Tahmasebi
dc.contributor.author
Rezaeijo, Seyed Masoud
dc.date.accessioned
2024-07-22T10:59:43Z
dc.date.available
2024-07-22T10:59:43Z
dc.date.issued
2023
dc.date.openaccess
0
dc.description.accesstime
w momencie opublikowania
dc.description.additional
Bibliogr. s. e370
dc.description.physical
e365-e370
dc.description.version
ostateczna wersja wydawcy
dc.description.volume
88
dc.identifier.doi
10.5114/pjr.2023.130815
dc.identifier.issn
1733-134X
dc.identifier.uri
https://ruj.uj.edu.pl/handle/item/388802
dc.language
eng
dc.language.container
eng
dc.rights
Udzielam licencji. Uznanie autorstwa - Użycie niekomercyjne - Bez utworów zależnych 4.0 Międzynarodowa
dc.rights.licence
CC-BY-NC-ND
dc.rights.uri
http://creativecommons.org/licenses/by-nc-nd/4.0/legalcode.pl
dc.share.type
otwarte czasopismo
dc.subject.en
auto-segmentation
dc.subject.en
head and neck tumor
dc.subject.en
morphological
dc.subject.en
PET images
dc.subtype
Article
dc.title
Auto-segmentation of head and neck tumors in positron emission tomography images using non-local means and morphological frameworks
dc.title.journal
Polish Journal of Radiology
dc.type
JournalArticle
dspace.entity.typeen
Publication
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