Probing the active site of class 3 L-asparaginase by mutagenesis : mutations of the ser-lys tandems of ReAV

2025
journal article
article
dc.abstract.enThe ReAV enzyme from Rhizobium etli, a representative of Class 3 L-asparaginases, is sequentially and structurally different from other known L-asparaginases. This distinctiveness makes ReAV a candidate for novel antileukemic therapies. ReAV is a homodimeric protein, with each subunit containing a highly specific zinc-binding site created by two cysteines, a lysine, and a water molecule. Two Ser-Lys tandems (Ser48-Lys51, Ser80-Lys263) are located in the close proximity of the metal binding site, with Ser48 hypothesized to be the catalytic nucleophile. To further investigate the catalytic process of ReAV, site-directed mutagenesis was employed to introduce alanine substitutions at residues from the Ser-Lys tandems and at Arg47, located near the Ser48-Lys51 tandem. These mutational studies, along with enzymatic assays and X-ray structure determinations, demonstrated that substitution of each of these highly conserved residues abolished the catalytic activity, confirming their essential role in enzyme mechanism.
dc.affiliationWydział Chemii : Zakład Krystalochemii i Krystalofizyki
dc.contributor.authorPokrywka, Kinga
dc.contributor.authorGrzechowiak, Marta
dc.contributor.authorSliwiak, Joanna
dc.contributor.authorWorsztynowicz, Paulina
dc.contributor.authorLoch, Joanna - 126313
dc.contributor.authorRuszkowski, Milosz
dc.contributor.authorGilski, Miroslaw
dc.contributor.authorJaskolski, Mariusz
dc.date.accession2025-07-07
dc.date.accessioned2025-07-07T10:32:59Z
dc.date.available2025-07-07T10:32:59Z
dc.date.createdat2025-07-04T08:53:49Zen
dc.date.issued2025
dc.date.openaccess0
dc.description.accesstimew momencie opublikowania
dc.description.number7
dc.description.versionostateczna wersja wydawcy
dc.description.volume15
dc.identifier.articleid944
dc.identifier.doi10.3390/biom15070944
dc.identifier.eissn2218-273X
dc.identifier.projectDRC AI
dc.identifier.urihttps://ruj.uj.edu.pl/handle/item/555160
dc.identifier.weblinkhttps://www.mdpi.com/2218-273X/15/7/944
dc.languageeng
dc.language.containereng
dc.rightsUdzielam licencji. Uznanie autorstwa 4.0 Międzynarodowa
dc.rights.licenceCC-BY
dc.rights.urihttp://creativecommons.org/licenses/by/4.0/legalcode.pl
dc.share.typeotwarte czasopismo
dc.subject.enhydrolase
dc.subject.enamidohydrolase
dc.subject.enL-asparaginase
dc.subject.enleukemia
dc.subject.enmetalloprotein
dc.subject.ensite-directed mutagenesis
dc.subject.enNessler reaction
dc.subject.enITC
dc.subject.enX-ray crystallography
dc.subtypeArticle
dc.titleProbing the active site of class 3 L-asparaginase by mutagenesis : mutations of the ser-lys tandems of ReAV
dc.title.journalBiomolecules
dc.typeJournalArticle
dspace.entity.typePublicationen
dc.abstract.en
The ReAV enzyme from Rhizobium etli, a representative of Class 3 L-asparaginases, is sequentially and structurally different from other known L-asparaginases. This distinctiveness makes ReAV a candidate for novel antileukemic therapies. ReAV is a homodimeric protein, with each subunit containing a highly specific zinc-binding site created by two cysteines, a lysine, and a water molecule. Two Ser-Lys tandems (Ser48-Lys51, Ser80-Lys263) are located in the close proximity of the metal binding site, with Ser48 hypothesized to be the catalytic nucleophile. To further investigate the catalytic process of ReAV, site-directed mutagenesis was employed to introduce alanine substitutions at residues from the Ser-Lys tandems and at Arg47, located near the Ser48-Lys51 tandem. These mutational studies, along with enzymatic assays and X-ray structure determinations, demonstrated that substitution of each of these highly conserved residues abolished the catalytic activity, confirming their essential role in enzyme mechanism.
dc.affiliation
Wydział Chemii : Zakład Krystalochemii i Krystalofizyki
dc.contributor.author
Pokrywka, Kinga
dc.contributor.author
Grzechowiak, Marta
dc.contributor.author
Sliwiak, Joanna
dc.contributor.author
Worsztynowicz, Paulina
dc.contributor.author
Loch, Joanna - 126313
dc.contributor.author
Ruszkowski, Milosz
dc.contributor.author
Gilski, Miroslaw
dc.contributor.author
Jaskolski, Mariusz
dc.date.accession
2025-07-07
dc.date.accessioned
2025-07-07T10:32:59Z
dc.date.available
2025-07-07T10:32:59Z
dc.date.createdaten
2025-07-04T08:53:49Z
dc.date.issued
2025
dc.date.openaccess
0
dc.description.accesstime
w momencie opublikowania
dc.description.number
7
dc.description.version
ostateczna wersja wydawcy
dc.description.volume
15
dc.identifier.articleid
944
dc.identifier.doi
10.3390/biom15070944
dc.identifier.eissn
2218-273X
dc.identifier.project
DRC AI
dc.identifier.uri
https://ruj.uj.edu.pl/handle/item/555160
dc.identifier.weblink
https://www.mdpi.com/2218-273X/15/7/944
dc.language
eng
dc.language.container
eng
dc.rights
Udzielam licencji. Uznanie autorstwa 4.0 Międzynarodowa
dc.rights.licence
CC-BY
dc.rights.uri
http://creativecommons.org/licenses/by/4.0/legalcode.pl
dc.share.type
otwarte czasopismo
dc.subject.en
hydrolase
dc.subject.en
amidohydrolase
dc.subject.en
L-asparaginase
dc.subject.en
leukemia
dc.subject.en
metalloprotein
dc.subject.en
site-directed mutagenesis
dc.subject.en
Nessler reaction
dc.subject.en
ITC
dc.subject.en
X-ray crystallography
dc.subtype
Article
dc.title
Probing the active site of class 3 L-asparaginase by mutagenesis : mutations of the ser-lys tandems of ReAV
dc.title.journal
Biomolecules
dc.type
JournalArticle
dspace.entity.typeen
Publication
Affiliations

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