Theoretical description of halogen bonding : an insight based on the natural orbitals for chemical valence combined with the extended-transition-state method (ETS-NOCV)

2013
journal article
article
46
cris.lastimport.wos2024-04-09T20:39:15Z
dc.abstract.enIn the present study we have characterized the halogen bonding in selected molecules H 3 N – ICF 3 ( 1- NH 3 ), (PH 3 ) 2 C – ICF 3 ( 1-CPH 3 ), C 3 H 7 Br – (IN 2 H 2 C 3 ) 2 C 6 H 4 ( 2-Br ), H 2 – (IN 2 H 2 C 3 ) 2 C 6 H 4 ( 2-H 2 ) and Cl – (IC 6 F 5 ) 2 C 7 H 10 N 2 O 5 ( 3-Cl) , containing from one halogen bond ( 1-NH 3 , 1-CPH 3 ) up to four connections in 3-Cl (the two Cl – HN and two Cl – I), based on recently proposed ETS- NOCV analysis. It was found based on the NOCV- deformation density components that the halogen bonding C – X ... B (X-halogen atom, B-Lewis base), contains a large degree of covalent contribution (the charge transfer to X ... B inter-atomic region) supported further by the electron dona- tion from base atom B to the empty σ *(C – X) orbital. Such charge transfers can be of similar importance compared to the electrostatic stabilization. Further, the covalent part of halogen bonding is due to the presence of σ -hole at outer part of halogen atom (X). ETS-NOCV approach allowed to visualize formation of the σ -hole at iodine atom of CF 3 I molecule. It has also been demonstrated that strongly elec- trophilic halogen bond donor, [C 6 H 4 (C 3 H 2 N 2 I) 2 ][OTf] 2 , can activate chemically inert isopropyl bromide ( 2-Br ) moiety via formation of Br – I bonding and bind the hydrogen mol- ecule ( 2-H 2 ). Finally, ETS-NOCVanalysis performed for 3- Cl leads to the conclusion that, in terms of the orbital- interaction component, the strength of halogen (Cl – I) bond is roughly three times more important than the hydrogen bonding (Cl – HN).pl
dc.affiliationWydział Chemii : Zakład Chemii Teoretycznej im. K. Gumińskiegopl
dc.affiliationWydział Chemii : Zakład Metod Obliczeniowych Chemiipl
dc.contributor.authorMitoraj, Mariusz - 160142 pl
dc.contributor.authorMichalak, Artur - 101384 pl
dc.date.accession2018-07-12pl
dc.date.accessioned2015-06-23T11:49:10Z
dc.date.available2015-06-23T11:49:10Z
dc.date.issued2013pl
dc.date.openaccess0
dc.description.accesstimew momencie opublikowania
dc.description.number11pl
dc.description.physical4681-4688pl
dc.description.versionostateczna wersja wydawcy
dc.description.volume19pl
dc.identifier.doi10.1007/s00894-012-1474-4pl
dc.identifier.eissn0948-5023pl
dc.identifier.issn1610-2940pl
dc.identifier.projectROD UJ / Ppl
dc.identifier.urihttp://ruj.uj.edu.pl/xmlui/handle/item/10118
dc.identifier.weblinkhttps://link.springer.com/content/pdf/10.1007%2Fs00894-012-1474-4.pdfpl
dc.languageengpl
dc.language.containerengpl
dc.rightsUdzielam licencji. Uznanie autorstwa 4.0 Międzynarodowa*
dc.rights.licenceCC-BY
dc.rights.urihttp://creativecommons.org/licenses/by/4.0/legalcode.pl*
dc.share.typeinne
dc.source.integratorfalse
dc.subtypeArticlepl
dc.titleTheoretical description of halogen bonding : an insight based on the natural orbitals for chemical valence combined with the extended-transition-state method (ETS-NOCV)pl
dc.title.journalJournal of Molecular Modelingpl
dc.typeJournalArticlepl
dspace.entity.typePublication
cris.lastimport.wos
2024-04-09T20:39:15Z
dc.abstract.enpl
In the present study we have characterized the halogen bonding in selected molecules H 3 N – ICF 3 ( 1- NH 3 ), (PH 3 ) 2 C – ICF 3 ( 1-CPH 3 ), C 3 H 7 Br – (IN 2 H 2 C 3 ) 2 C 6 H 4 ( 2-Br ), H 2 – (IN 2 H 2 C 3 ) 2 C 6 H 4 ( 2-H 2 ) and Cl – (IC 6 F 5 ) 2 C 7 H 10 N 2 O 5 ( 3-Cl) , containing from one halogen bond ( 1-NH 3 , 1-CPH 3 ) up to four connections in 3-Cl (the two Cl – HN and two Cl – I), based on recently proposed ETS- NOCV analysis. It was found based on the NOCV- deformation density components that the halogen bonding C – X ... B (X-halogen atom, B-Lewis base), contains a large degree of covalent contribution (the charge transfer to X ... B inter-atomic region) supported further by the electron dona- tion from base atom B to the empty σ *(C – X) orbital. Such charge transfers can be of similar importance compared to the electrostatic stabilization. Further, the covalent part of halogen bonding is due to the presence of σ -hole at outer part of halogen atom (X). ETS-NOCV approach allowed to visualize formation of the σ -hole at iodine atom of CF 3 I molecule. It has also been demonstrated that strongly elec- trophilic halogen bond donor, [C 6 H 4 (C 3 H 2 N 2 I) 2 ][OTf] 2 , can activate chemically inert isopropyl bromide ( 2-Br ) moiety via formation of Br – I bonding and bind the hydrogen mol- ecule ( 2-H 2 ). Finally, ETS-NOCVanalysis performed for 3- Cl leads to the conclusion that, in terms of the orbital- interaction component, the strength of halogen (Cl – I) bond is roughly three times more important than the hydrogen bonding (Cl – HN).
dc.affiliationpl
Wydział Chemii : Zakład Chemii Teoretycznej im. K. Gumińskiego
dc.affiliationpl
Wydział Chemii : Zakład Metod Obliczeniowych Chemii
dc.contributor.authorpl
Mitoraj, Mariusz - 160142
dc.contributor.authorpl
Michalak, Artur - 101384
dc.date.accessionpl
2018-07-12
dc.date.accessioned
2015-06-23T11:49:10Z
dc.date.available
2015-06-23T11:49:10Z
dc.date.issuedpl
2013
dc.date.openaccess
0
dc.description.accesstime
w momencie opublikowania
dc.description.numberpl
11
dc.description.physicalpl
4681-4688
dc.description.version
ostateczna wersja wydawcy
dc.description.volumepl
19
dc.identifier.doipl
10.1007/s00894-012-1474-4
dc.identifier.eissnpl
0948-5023
dc.identifier.issnpl
1610-2940
dc.identifier.projectpl
ROD UJ / P
dc.identifier.uri
http://ruj.uj.edu.pl/xmlui/handle/item/10118
dc.identifier.weblinkpl
https://link.springer.com/content/pdf/10.1007%2Fs00894-012-1474-4.pdf
dc.languagepl
eng
dc.language.containerpl
eng
dc.rights*
Udzielam licencji. Uznanie autorstwa 4.0 Międzynarodowa
dc.rights.licence
CC-BY
dc.rights.uri*
http://creativecommons.org/licenses/by/4.0/legalcode.pl
dc.share.type
inne
dc.source.integrator
false
dc.subtypepl
Article
dc.titlepl
Theoretical description of halogen bonding : an insight based on the natural orbitals for chemical valence combined with the extended-transition-state method (ETS-NOCV)
dc.title.journalpl
Journal of Molecular Modeling
dc.typepl
JournalArticle
dspace.entity.type
Publication
Affiliations

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