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Theoretical description of halogen bonding : an insight based on the natural orbitals for chemical valence combined with the extended-transition-state method (ETS-NOCV)
In the present study we have characterized the halogen bonding in selected molecules H 3 N – ICF 3 ( 1- NH 3 ), (PH 3 ) 2 C – ICF 3 ( 1-CPH 3 ), C 3 H 7 Br – (IN 2 H 2 C 3 ) 2 C 6 H 4 ( 2-Br ), H 2 – (IN 2 H 2 C 3 ) 2 C 6 H 4 ( 2-H 2 ) and Cl – (IC 6 F 5 ) 2 C 7 H 10 N 2 O 5 ( 3-Cl) , containing from one halogen bond ( 1-NH 3 , 1-CPH 3 ) up to four connections in 3-Cl (the two Cl – HN and two Cl – I), based on recently proposed ETS- NOCV analysis. It was found based on the NOCV- deformation density components that the halogen bonding C – X ... B (X-halogen atom, B-Lewis base), contains a large degree of covalent contribution (the charge transfer to X ... B inter-atomic region) supported further by the electron dona- tion from base atom B to the empty σ *(C – X) orbital. Such charge transfers can be of similar importance compared to the electrostatic stabilization. Further, the covalent part of halogen bonding is due to the presence of σ -hole at outer part of halogen atom (X). ETS-NOCV approach allowed to visualize formation of the σ -hole at iodine atom of CF 3 I molecule. It has also been demonstrated that strongly elec- trophilic halogen bond donor, [C 6 H 4 (C 3 H 2 N 2 I) 2 ][OTf] 2 , can activate chemically inert isopropyl bromide ( 2-Br ) moiety via formation of Br – I bonding and bind the hydrogen mol- ecule ( 2-H 2 ). Finally, ETS-NOCVanalysis performed for 3- Cl leads to the conclusion that, in terms of the orbital- interaction component, the strength of halogen (Cl – I) bond is roughly three times more important than the hydrogen bonding (Cl – HN).
| cris.lastimport.wos | 2024-04-09T20:39:15Z | |
| dc.abstract.en | In the present study we have characterized the halogen bonding in selected molecules H 3 N – ICF 3 ( 1- NH 3 ), (PH 3 ) 2 C – ICF 3 ( 1-CPH 3 ), C 3 H 7 Br – (IN 2 H 2 C 3 ) 2 C 6 H 4 ( 2-Br ), H 2 – (IN 2 H 2 C 3 ) 2 C 6 H 4 ( 2-H 2 ) and Cl – (IC 6 F 5 ) 2 C 7 H 10 N 2 O 5 ( 3-Cl) , containing from one halogen bond ( 1-NH 3 , 1-CPH 3 ) up to four connections in 3-Cl (the two Cl – HN and two Cl – I), based on recently proposed ETS- NOCV analysis. It was found based on the NOCV- deformation density components that the halogen bonding C – X ... B (X-halogen atom, B-Lewis base), contains a large degree of covalent contribution (the charge transfer to X ... B inter-atomic region) supported further by the electron dona- tion from base atom B to the empty σ *(C – X) orbital. Such charge transfers can be of similar importance compared to the electrostatic stabilization. Further, the covalent part of halogen bonding is due to the presence of σ -hole at outer part of halogen atom (X). ETS-NOCV approach allowed to visualize formation of the σ -hole at iodine atom of CF 3 I molecule. It has also been demonstrated that strongly elec- trophilic halogen bond donor, [C 6 H 4 (C 3 H 2 N 2 I) 2 ][OTf] 2 , can activate chemically inert isopropyl bromide ( 2-Br ) moiety via formation of Br – I bonding and bind the hydrogen mol- ecule ( 2-H 2 ). Finally, ETS-NOCVanalysis performed for 3- Cl leads to the conclusion that, in terms of the orbital- interaction component, the strength of halogen (Cl – I) bond is roughly three times more important than the hydrogen bonding (Cl – HN). | pl |
| dc.affiliation | Wydział Chemii : Zakład Chemii Teoretycznej im. K. Gumińskiego | pl |
| dc.affiliation | Wydział Chemii : Zakład Metod Obliczeniowych Chemii | pl |
| dc.contributor.author | Mitoraj, Mariusz - 160142 | pl |
| dc.contributor.author | Michalak, Artur - 101384 | pl |
| dc.date.accession | 2018-07-12 | pl |
| dc.date.accessioned | 2015-06-23T11:49:10Z | |
| dc.date.available | 2015-06-23T11:49:10Z | |
| dc.date.issued | 2013 | pl |
| dc.date.openaccess | 0 | |
| dc.description.accesstime | w momencie opublikowania | |
| dc.description.number | 11 | pl |
| dc.description.physical | 4681-4688 | pl |
| dc.description.version | ostateczna wersja wydawcy | |
| dc.description.volume | 19 | pl |
| dc.identifier.doi | 10.1007/s00894-012-1474-4 | pl |
| dc.identifier.eissn | 0948-5023 | pl |
| dc.identifier.issn | 1610-2940 | pl |
| dc.identifier.project | ROD UJ / P | pl |
| dc.identifier.uri | http://ruj.uj.edu.pl/xmlui/handle/item/10118 | |
| dc.identifier.weblink | https://link.springer.com/content/pdf/10.1007%2Fs00894-012-1474-4.pdf | pl |
| dc.language | eng | pl |
| dc.language.container | eng | pl |
| dc.rights | Udzielam licencji. Uznanie autorstwa 4.0 Międzynarodowa | * |
| dc.rights.licence | CC-BY | |
| dc.rights.uri | http://creativecommons.org/licenses/by/4.0/legalcode.pl | * |
| dc.share.type | inne | |
| dc.source.integrator | false | |
| dc.subtype | Article | pl |
| dc.title | Theoretical description of halogen bonding : an insight based on the natural orbitals for chemical valence combined with the extended-transition-state method (ETS-NOCV) | pl |
| dc.title.journal | Journal of Molecular Modeling | pl |
| dc.type | JournalArticle | pl |
| dspace.entity.type | Publication |
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