Pyrazine -hole interaction preference in crystal structures and spectroscopic properties of crystalline C8/C9 Alkyl-1H-5,6,10b-triazaacephenanthrylene-2-carbonitrile

2025
journal article
article
dc.abstract.enThe cooperative electrostatic and dispersive interactions of the pyrazine π-hole in fused triaazaacephenanthrylene (TAAP) systems influence the crystal structures and spectroscopic properties of solid TAAP and TAAP derivatives (8/9-tert-Bu, 8,9-diMe, and N5-4-Cl/$OEtC_{6}H_{4}$). In crystalline phases, the pyrazine π-hole (Cg3) induces face-to-face oriented centrosymmetric dimer formation by selecting either (1) a donor partner from the conjugated electron pair of the trivalent nitrogen atom N10b($sp^{2}$) in TAAP, (2) π-electrons of the imine C1═N11($sp^{2}$)–H11 moiety (in some TAAP derivatives), or (3) lone pair (lp) interactions of the solvate dioxane oxygen (O) atoms ($sp^{3}$) in a centrosymmetric tetrameric cluster [comprising four (9-tert-BuTAAP) molecules and a dioxane molecule]. The calculated energy of the electrostatic noncovalent interaction between the dioxane lp and pyrazine π-hole was −4.64 kcal/mol, and the dispersion energy was −8.11 kcal/mol (with a Cg3···O separation of 3.170 Å). The electrostatic energy of one 9-tert-BuTAAP molecule in a centrosymmetric dimer was −6.23 kcal/mol, and the dispersion energy was −16.6 kcal/mol, with a Cg3···N11 separation of 3.080 Å. After changing the donor partner to an amide carbonyl group that competes with imine, the two methyl groups at positions 8 and 9 of TAAP caused the mutual orientation of the two dimer molecules to change from a centrosymmetric face-to-face relationship to parallel stacked molecules. In the stack, the strong dispersion (−16.9 kcal/mol) and electrostatic energies (including dipole–dipole interactions, −8.15 kcal/mol) influenced the carbonyl O atom interactions with Cg3 (separation of 3.414 Å) and the pyrazine C5a═N6 bond (3.196 Å).
dc.affiliationWydział Chemii : Zakład Chemii Organicznej
dc.affiliationWydział Chemii : Zakład Krystalochemii i Krystalofizyki
dc.affiliationWydział Chemii : Zakład Chemii Fizycznej i Elektrochemii
dc.affiliationWydział Chemii : Zakład Chemii Nieorganicznej
dc.affiliationWydział Chemii : Zakład Technologii Chemicznej
dc.affiliationSzkoła Doktorska Nauk Ścisłych i Przyrodniczych
dc.contributor.authorOstrowska, Katarzyna - 131207
dc.contributor.authorBożek, Igor
dc.contributor.authorStadnicka, Katarzyna - 132048
dc.contributor.authorGoszczycki, Piotr - 176452
dc.contributor.authorBrela, Mateusz - 114775
dc.contributor.authorLiberka, Michał - 248539
dc.contributor.authorWęgrzyn, Agnieszka - 132595
dc.contributor.authorBanasiuk, Kamil
dc.contributor.authorRęka, Paweł - 256959
dc.contributor.authorGrolik, Jarosław - 144111
dc.date.accession2025-10-16
dc.date.accessioned2025-10-16T10:51:13Z
dc.date.available2025-10-16T10:51:13Z
dc.date.createdat2025-10-09T16:42:37Zen
dc.date.issued2025
dc.date.openaccess0
dc.description.accesstimew momencie opublikowania
dc.description.number19
dc.description.physical8188-8195
dc.description.versionostateczna wersja wydawcy
dc.description.volume25
dc.identifier.doi10.1021/acs.cgd.5c01009
dc.identifier.eissn1528-7505
dc.identifier.issn1528-7483
dc.identifier.projectDRC AI
dc.identifier.urihttps://ruj.uj.edu.pl/handle/item/563017
dc.identifier.weblinkhttps://pubs.acs.org/doi/10.1021/acs.cgd.5c01009
dc.languageeng
dc.language.containereng
dc.rightsUdzielam licencji. Uznanie autorstwa 4.0 Międzynarodowa
dc.rights.licenceCC-BY
dc.rights.urihttp://creativecommons.org/licenses/by/4.0/legalcode.pl
dc.share.typeinne
dc.subtypeArticle
dc.titlePyrazine $\pi$-hole interaction preference in crystal structures and spectroscopic properties of crystalline C8/C9 Alkyl-1H-5,6,10b-triazaacephenanthrylene-2-carbonitrile
dc.title.journalCrystal Growth & Design
dc.typeJournalArticle
dspace.entity.typePublicationen
dc.abstract.en
The cooperative electrostatic and dispersive interactions of the pyrazine π-hole in fused triaazaacephenanthrylene (TAAP) systems influence the crystal structures and spectroscopic properties of solid TAAP and TAAP derivatives (8/9-tert-Bu, 8,9-diMe, and N5-4-Cl/$OEtC_{6}H_{4}$). In crystalline phases, the pyrazine π-hole (Cg3) induces face-to-face oriented centrosymmetric dimer formation by selecting either (1) a donor partner from the conjugated electron pair of the trivalent nitrogen atom N10b($sp^{2}$) in TAAP, (2) π-electrons of the imine C1═N11($sp^{2}$)–H11 moiety (in some TAAP derivatives), or (3) lone pair (lp) interactions of the solvate dioxane oxygen (O) atoms ($sp^{3}$) in a centrosymmetric tetrameric cluster [comprising four (9-tert-BuTAAP) molecules and a dioxane molecule]. The calculated energy of the electrostatic noncovalent interaction between the dioxane lp and pyrazine π-hole was −4.64 kcal/mol, and the dispersion energy was −8.11 kcal/mol (with a Cg3···O separation of 3.170 Å). The electrostatic energy of one 9-tert-BuTAAP molecule in a centrosymmetric dimer was −6.23 kcal/mol, and the dispersion energy was −16.6 kcal/mol, with a Cg3···N11 separation of 3.080 Å. After changing the donor partner to an amide carbonyl group that competes with imine, the two methyl groups at positions 8 and 9 of TAAP caused the mutual orientation of the two dimer molecules to change from a centrosymmetric face-to-face relationship to parallel stacked molecules. In the stack, the strong dispersion (−16.9 kcal/mol) and electrostatic energies (including dipole–dipole interactions, −8.15 kcal/mol) influenced the carbonyl O atom interactions with Cg3 (separation of 3.414 Å) and the pyrazine C5a═N6 bond (3.196 Å).
dc.affiliation
Wydział Chemii : Zakład Chemii Organicznej
dc.affiliation
Wydział Chemii : Zakład Krystalochemii i Krystalofizyki
dc.affiliation
Wydział Chemii : Zakład Chemii Fizycznej i Elektrochemii
dc.affiliation
Wydział Chemii : Zakład Chemii Nieorganicznej
dc.affiliation
Wydział Chemii : Zakład Technologii Chemicznej
dc.affiliation
Szkoła Doktorska Nauk Ścisłych i Przyrodniczych
dc.contributor.author
Ostrowska, Katarzyna - 131207
dc.contributor.author
Bożek, Igor
dc.contributor.author
Stadnicka, Katarzyna - 132048
dc.contributor.author
Goszczycki, Piotr - 176452
dc.contributor.author
Brela, Mateusz - 114775
dc.contributor.author
Liberka, Michał - 248539
dc.contributor.author
Węgrzyn, Agnieszka - 132595
dc.contributor.author
Banasiuk, Kamil
dc.contributor.author
Ręka, Paweł - 256959
dc.contributor.author
Grolik, Jarosław - 144111
dc.date.accession
2025-10-16
dc.date.accessioned
2025-10-16T10:51:13Z
dc.date.available
2025-10-16T10:51:13Z
dc.date.createdaten
2025-10-09T16:42:37Z
dc.date.issued
2025
dc.date.openaccess
0
dc.description.accesstime
w momencie opublikowania
dc.description.number
19
dc.description.physical
8188-8195
dc.description.version
ostateczna wersja wydawcy
dc.description.volume
25
dc.identifier.doi
10.1021/acs.cgd.5c01009
dc.identifier.eissn
1528-7505
dc.identifier.issn
1528-7483
dc.identifier.project
DRC AI
dc.identifier.uri
https://ruj.uj.edu.pl/handle/item/563017
dc.identifier.weblink
https://pubs.acs.org/doi/10.1021/acs.cgd.5c01009
dc.language
eng
dc.language.container
eng
dc.rights
Udzielam licencji. Uznanie autorstwa 4.0 Międzynarodowa
dc.rights.licence
CC-BY
dc.rights.uri
http://creativecommons.org/licenses/by/4.0/legalcode.pl
dc.share.type
inne
dc.subtype
Article
dc.title
Pyrazine $\pi$-hole interaction preference in crystal structures and spectroscopic properties of crystalline C8/C9 Alkyl-1H-5,6,10b-triazaacephenanthrylene-2-carbonitrile
dc.title.journal
Crystal Growth & Design
dc.type
JournalArticle
dspace.entity.typeen
Publication
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