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Structural specificity of polymorphic forms of
α-synuclein
amyloid
misfolding
external force field
hydrophobic core
The structural transformation producing amyloids is a phenomenon that sheds new light on the protein folding problem. The analysis of the polymorphic structures of the α-synuclein amyloid available in the PDB database allows analysis of the amyloid-oriented structural transformation itself, but also the protein folding process as such. The polymorphic amyloid structures of α-synuclein analyzed employing the hydrophobicity distribution (fuzzy oil drop model) reveal a differentiation with a dominant distribution consistent with the micelle-like system (hydrophobic core with polar shell). This type of ordering of the hydrophobicity distribution covers the entire spectrum from the example with all three structural units (single chain, proto-fibril, super-fibril) exhibiting micelle-like form, through gradually emerging examples of local disorder, to structures with an extremely different structuring pattern. The water environment directing protein structures towards the generation of ribbon micelle-like structures (concentration of hydrophobic residues in the center of the molecule forming a hydrophobic core with the exposure of polar residues on the surface) also plays a role in the amyloid forms of α-synuclein. The polymorphic forms of α-synuclein reveal local structural differentiation with a common tendency to accept the micelle-like structuralization in certain common fragments of the polypeptide chain of this protein.
| cris.lastimport.wos | 2024-04-09T21:20:20Z | |
| dc.abstract.en | The structural transformation producing amyloids is a phenomenon that sheds new light on the protein folding problem. The analysis of the polymorphic structures of the α-synuclein amyloid available in the PDB database allows analysis of the amyloid-oriented structural transformation itself, but also the protein folding process as such. The polymorphic amyloid structures of α-synuclein analyzed employing the hydrophobicity distribution (fuzzy oil drop model) reveal a differentiation with a dominant distribution consistent with the micelle-like system (hydrophobic core with polar shell). This type of ordering of the hydrophobicity distribution covers the entire spectrum from the example with all three structural units (single chain, proto-fibril, super-fibril) exhibiting micelle-like form, through gradually emerging examples of local disorder, to structures with an extremely different structuring pattern. The water environment directing protein structures towards the generation of ribbon micelle-like structures (concentration of hydrophobic residues in the center of the molecule forming a hydrophobic core with the exposure of polar residues on the surface) also plays a role in the amyloid forms of α-synuclein. The polymorphic forms of α-synuclein reveal local structural differentiation with a common tendency to accept the micelle-like structuralization in certain common fragments of the polypeptide chain of this protein. | |
| dc.affiliation | Wydział Lekarski : Zakład Bioinformatyki i Telemedycyny | pl |
| dc.cm.date | 2023-06-15T22:17:38Z | |
| dc.cm.id | 112395 | pl |
| dc.cm.idOmega | UJCMae886d913de84899aee82907c158a89b | pl |
| dc.contributor.author | Roterman-Konieczna, Irena - 133298 | pl |
| dc.contributor.author | Stapor, Katarzyna | pl |
| dc.contributor.author | Konieczny, Leszek | pl |
| dc.date.accession | 2023-06-15 | pl |
| dc.date.accessioned | 2023-06-15T22:17:38Z | |
| dc.date.available | 2023-06-15T22:17:38Z | |
| dc.date.issued | 2023 | pl |
| dc.date.openaccess | 0 | |
| dc.description.accesstime | w momencie opublikowania | |
| dc.description.number | 5 | pl |
| dc.description.version | ostateczna wersja wydawcy | |
| dc.description.volume | 11 | pl |
| dc.identifier.articleid | 1324 | pl |
| dc.identifier.doi | 10.3390/biomedicines11051324 | pl |
| dc.identifier.eissn | 2227-9059 | pl |
| dc.identifier.issn | 2227-9059 | pl |
| dc.identifier.uri | https://ruj.uj.edu.pl/xmlui/handle/item/312323 | |
| dc.identifier.weblink | https://www.mdpi.com/2227-9059/11/5/1324 | pl |
| dc.language | eng | pl |
| dc.pbn.affiliation | Dziedzina nauk ścisłych i przyrodniczych : nauki biologiczne | |
| dc.rights | Udzielam licencji. Uznanie autorstwa 4.0 Międzynarodowa | |
| dc.rights.licence | CC-BY | |
| dc.rights.simpleview | Wolny dostęp | |
| dc.rights.uri | http://creativecommons.org/licenses/by/4.0/legalcode.pl | |
| dc.share.type | Otwarte czasopismo | |
| dc.subject.en | α-synuclein | |
| dc.subject.en | amyloid | |
| dc.subject.en | misfolding | |
| dc.subject.en | external force field | |
| dc.subject.en | hydrophobic core | |
| dc.subtype | Article | pl |
| dc.title | Structural specificity of polymorphic forms of $\alpha$-synuclein amyloid | pl |
| dc.title.journal | Biomedicines | pl |
| dc.type | JournalArticle | pl |
| dspace.entity.type | Publication |
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