Structural specificity of polymorphic forms of -synuclein amyloid

2023
journal article
article
3
cris.lastimport.wos2024-04-09T21:20:20Z
dc.abstract.enThe structural transformation producing amyloids is a phenomenon that sheds new light on the protein folding problem. The analysis of the polymorphic structures of the α-synuclein amyloid available in the PDB database allows analysis of the amyloid-oriented structural transformation itself, but also the protein folding process as such. The polymorphic amyloid structures of α-synuclein analyzed employing the hydrophobicity distribution (fuzzy oil drop model) reveal a differentiation with a dominant distribution consistent with the micelle-like system (hydrophobic core with polar shell). This type of ordering of the hydrophobicity distribution covers the entire spectrum from the example with all three structural units (single chain, proto-fibril, super-fibril) exhibiting micelle-like form, through gradually emerging examples of local disorder, to structures with an extremely different structuring pattern. The water environment directing protein structures towards the generation of ribbon micelle-like structures (concentration of hydrophobic residues in the center of the molecule forming a hydrophobic core with the exposure of polar residues on the surface) also plays a role in the amyloid forms of α-synuclein. The polymorphic forms of α-synuclein reveal local structural differentiation with a common tendency to accept the micelle-like structuralization in certain common fragments of the polypeptide chain of this protein.
dc.affiliationWydział Lekarski : Zakład Bioinformatyki i Telemedycynypl
dc.cm.date2023-06-15T22:17:38Z
dc.cm.id112395pl
dc.cm.idOmegaUJCMae886d913de84899aee82907c158a89bpl
dc.contributor.authorRoterman-Konieczna, Irena - 133298 pl
dc.contributor.authorStapor, Katarzynapl
dc.contributor.authorKonieczny, Leszekpl
dc.date.accession2023-06-15pl
dc.date.accessioned2023-06-15T22:17:38Z
dc.date.available2023-06-15T22:17:38Z
dc.date.issued2023pl
dc.date.openaccess0
dc.description.accesstimew momencie opublikowania
dc.description.number5pl
dc.description.versionostateczna wersja wydawcy
dc.description.volume11pl
dc.identifier.articleid1324pl
dc.identifier.doi10.3390/biomedicines11051324pl
dc.identifier.eissn2227-9059pl
dc.identifier.issn2227-9059pl
dc.identifier.urihttps://ruj.uj.edu.pl/xmlui/handle/item/312323
dc.identifier.weblinkhttps://www.mdpi.com/2227-9059/11/5/1324pl
dc.languageengpl
dc.pbn.affiliationDziedzina nauk ścisłych i przyrodniczych : nauki biologiczne
dc.rightsUdzielam licencji. Uznanie autorstwa 4.0 Międzynarodowa
dc.rights.licenceCC-BY
dc.rights.simpleviewWolny dostęp
dc.rights.urihttp://creativecommons.org/licenses/by/4.0/legalcode.pl
dc.share.typeOtwarte czasopismo
dc.subject.enα-synuclein
dc.subject.enamyloid
dc.subject.enmisfolding
dc.subject.enexternal force field
dc.subject.enhydrophobic core
dc.subtypeArticlepl
dc.titleStructural specificity of polymorphic forms of $\alpha$-synuclein amyloidpl
dc.title.journalBiomedicinespl
dc.typeJournalArticlepl
dspace.entity.typePublication
cris.lastimport.wos
2024-04-09T21:20:20Z
dc.abstract.en
The structural transformation producing amyloids is a phenomenon that sheds new light on the protein folding problem. The analysis of the polymorphic structures of the α-synuclein amyloid available in the PDB database allows analysis of the amyloid-oriented structural transformation itself, but also the protein folding process as such. The polymorphic amyloid structures of α-synuclein analyzed employing the hydrophobicity distribution (fuzzy oil drop model) reveal a differentiation with a dominant distribution consistent with the micelle-like system (hydrophobic core with polar shell). This type of ordering of the hydrophobicity distribution covers the entire spectrum from the example with all three structural units (single chain, proto-fibril, super-fibril) exhibiting micelle-like form, through gradually emerging examples of local disorder, to structures with an extremely different structuring pattern. The water environment directing protein structures towards the generation of ribbon micelle-like structures (concentration of hydrophobic residues in the center of the molecule forming a hydrophobic core with the exposure of polar residues on the surface) also plays a role in the amyloid forms of α-synuclein. The polymorphic forms of α-synuclein reveal local structural differentiation with a common tendency to accept the micelle-like structuralization in certain common fragments of the polypeptide chain of this protein.
dc.affiliationpl
Wydział Lekarski : Zakład Bioinformatyki i Telemedycyny
dc.cm.date
2023-06-15T22:17:38Z
dc.cm.idpl
112395
dc.cm.idOmegapl
UJCMae886d913de84899aee82907c158a89b
dc.contributor.authorpl
Roterman-Konieczna, Irena - 133298
dc.contributor.authorpl
Stapor, Katarzyna
dc.contributor.authorpl
Konieczny, Leszek
dc.date.accessionpl
2023-06-15
dc.date.accessioned
2023-06-15T22:17:38Z
dc.date.available
2023-06-15T22:17:38Z
dc.date.issuedpl
2023
dc.date.openaccess
0
dc.description.accesstime
w momencie opublikowania
dc.description.numberpl
5
dc.description.version
ostateczna wersja wydawcy
dc.description.volumepl
11
dc.identifier.articleidpl
1324
dc.identifier.doipl
10.3390/biomedicines11051324
dc.identifier.eissnpl
2227-9059
dc.identifier.issnpl
2227-9059
dc.identifier.uri
https://ruj.uj.edu.pl/xmlui/handle/item/312323
dc.identifier.weblinkpl
https://www.mdpi.com/2227-9059/11/5/1324
dc.languagepl
eng
dc.pbn.affiliation
Dziedzina nauk ścisłych i przyrodniczych : nauki biologiczne
dc.rights
Udzielam licencji. Uznanie autorstwa 4.0 Międzynarodowa
dc.rights.licence
CC-BY
dc.rights.simpleview
Wolny dostęp
dc.rights.uri
http://creativecommons.org/licenses/by/4.0/legalcode.pl
dc.share.type
Otwarte czasopismo
dc.subject.en
α-synuclein
dc.subject.en
amyloid
dc.subject.en
misfolding
dc.subject.en
external force field
dc.subject.en
hydrophobic core
dc.subtypepl
Article
dc.titlepl
Structural specificity of polymorphic forms of $\alpha$-synuclein amyloid
dc.title.journalpl
Biomedicines
dc.typepl
JournalArticle
dspace.entity.type
Publication
Affiliations

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