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ETS-NOCV description of σ-hole bonding
Karol Dyduch - Department of Theoretical Chemistry, Faculty of Chemistry, Jagiellonian University
The ETS-NOCVanalysis was applied to describe the σ -hole in a systematic way in a series of halogen com- pounds, CF 3 -X ( X 0 I, Br, Cl, F), CH 3 I, and C(CH3) n H 3-n -I ( n 0 1,2,3), as well as for the example germanium-based systems. GeXH 3 , X 0 F,Cl,H.Further,theETS-NOCV analysis was used to characterize bonding with ammonia for these systems. The results show that the dominating contribution to the deformation density, Δ ρ 1 , exhibits the negative-value area with a minimum, corresponding to σ
hole. The “ size ” (spatial extension of negative value) and “ depth ” (minium value) of the σ -hole varies for different X in CF 3 -X, and is influenced by the carbon substituents (fluorine atoms, hydrogen atoms, methyl groups). The size and depth of σ -hole decreases in the order: I, Br, Cl, F in CF 3 -X. In CH 3 -I and C(CH3) n H 3-n -I, compared to CF 3 -I, introduction of hydrogen atoms and their subsequent replacements by methyl groups lead to the systematic de- crease in the σ -hole size and depth. The ETS-NOCV σ -hole picture is consistent with the existence the positive MEP area at the extension of σ -hole generating bond. Finally, the NOCV deformation density contours as well as by the ETS orbital-interaction e nergy indicate that the σ -hole-based bond with ammonia contains a degree of covalent contribu- tion. In all analyzed systems, it was found that the electro- static energy is approximately two times larger than the orbital-interaction term, confirming the indisputable role of the electrostatic stabilization in halogen bonding and σ -hole bonding.
dc.abstract.en | The ETS-NOCVanalysis was applied to describe the σ -hole in a systematic way in a series of halogen com- pounds, CF 3 -X ( X 0 I, Br, Cl, F), CH 3 I, and C(CH3) n H 3-n -I ( n 0 1,2,3), as well as for the example germanium-based systems. GeXH 3 , X 0 F,Cl,H.Further,theETS-NOCV analysis was used to characterize bonding with ammonia for these systems. The results show that the dominating contribution to the deformation density, Δ ρ 1 , exhibits the negative-value area with a minimum, corresponding to σ - hole. The “ size ” (spatial extension of negative value) and “ depth ” (minium value) of the σ -hole varies for different X in CF 3 -X, and is influenced by the carbon substituents (fluorine atoms, hydrogen atoms, methyl groups). The size and depth of σ -hole decreases in the order: I, Br, Cl, F in CF 3 -X. In CH 3 -I and C(CH3) n H 3-n -I, compared to CF 3 -I, introduction of hydrogen atoms and their subsequent replacements by methyl groups lead to the systematic de- crease in the σ -hole size and depth. The ETS-NOCV σ -hole picture is consistent with the existence the positive MEP area at the extension of σ -hole generating bond. Finally, the NOCV deformation density contours as well as by the ETS orbital-interaction e nergy indicate that the σ -hole-based bond with ammonia contains a degree of covalent contribu- tion. In all analyzed systems, it was found that the electro- static energy is approximately two times larger than the orbital-interaction term, confirming the indisputable role of the electrostatic stabilization in halogen bonding and σ -hole bonding. | pl |
dc.affiliation | Wydział Chemii : Zakład Chemii Teoretycznej im. K. Gumińskiego | pl |
dc.affiliation | Wydział Chemii : Zakład Metod Obliczeniowych Chemii | pl |
dc.contributor.author | Dyduch, Karol - 107712 | pl |
dc.contributor.author | Mitoraj, Mariusz - 160142 | pl |
dc.contributor.author | Michalak, Artur - 101384 | pl |
dc.date.accession | 2019-02-07 | pl |
dc.date.accessioned | 2015-06-23T11:09:42Z | |
dc.date.available | 2015-06-23T11:09:42Z | |
dc.date.issued | 2013 | pl |
dc.date.openaccess | 0 | |
dc.description.accesstime | w momencie opublikowania | |
dc.description.additional | Karol Dyduch - Department of Theoretical Chemistry, Faculty of Chemistry, Jagiellonian University | pl |
dc.description.number | 7 | pl |
dc.description.physical | 2747-2758 | pl |
dc.description.version | ostateczna wersja wydawcy | |
dc.description.volume | 19 | pl |
dc.identifier.doi | 10.1007/s00894-012-1591-0 | pl |
dc.identifier.eissn | 0948-5023 | pl |
dc.identifier.issn | 1610-2940 | pl |
dc.identifier.project | ROD UJ / P | pl |
dc.identifier.uri | http://ruj.uj.edu.pl/xmlui/handle/item/10112 | |
dc.identifier.weblink | https://link.springer.com/content/pdf/10.1007%2Fs00894-012-1591-0.pdf | pl |
dc.language | eng | pl |
dc.language.container | eng | pl |
dc.rights | Udzielam licencji. Uznanie autorstwa 4.0 Międzynarodowa | * |
dc.rights.licence | CC-BY | |
dc.rights.uri | http://creativecommons.org/licenses/by/4.0/legalcode.pl | * |
dc.share.type | inne | |
dc.subtype | Article | pl |
dc.title | ETS-NOCV description of σ-hole bonding | pl |
dc.title.journal | Journal of Molecular Modeling | pl |
dc.type | JournalArticle | pl |
dspace.entity.type | Publication |
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