Temperature- and pressure-dependent stopped-flow kinetic studies of jack bean urease : implications for the catalytic mechanism

2012
journal article
article
dc.abstract.enUrease, a Ni-containing metalloenzyme, fea- tures an activity that has profound medical and agricultural implications. The mechanism of this activity, however, has not been as yet thoroughly established. Accordingly, to improve its understanding, in this study we analyzed the steady-state kinetic parameters of the enzyme (jack bean), K M and k cat , measured at different temperatures and pres- sures. Such an analysis is useful as it provides information on the molecular nature of the intermediate and transition states of the catalytic reaction. We measured the parame- ters in a noninteracting buffer using a stopped-flow tech- nique in the temperature range 15–35 ° C and in the pressure range 5–132 MPa, the pressure-dependent mea- surements being the first of their kind performed for urease. While temperature enhanced the activity of urease, pres- sure inhibited the enzyme; the inhibition was biphasic. Analyzing K M provided the characteristics of the formation of the ES complex, and analyzing k cat , the characteristics of the activation of ES. From the temperature-dependent measurements, the energetic parameters were derived, i.e. thermodynamic D H o and D S o for ES formation, and kinetic D H = and D S = for ES activation, while from the pressure- dependent measurements, the binding D V b and activation D V 6 ¼ cat volumes were determined. The thermodynamic and activation parameters obtained are discussed in terms of the current proposals for the mechanism of the urease reaction, and they are found to support the mechanism proposed by Benini et al. ( Structure 7:205–216; 1999), in which the Ni–Ni bridging hydroxide—not the terminal hydroxide—is the nucleophile in the catalytic reaction.pl
dc.affiliationWydział Chemii : Zakład Chemii Nieorganicznejpl
dc.affiliationWydział Chemii : Zakład Chemii Ogólnejpl
dc.contributor.authorKrajewska, Barbara - 129412 pl
dc.contributor.authorvan Eldik, Rudi - 239234 pl
dc.contributor.authorBrindell, Małgorzata - 127426 pl
dc.date.accession2018-12-03pl
dc.date.accessioned2015-03-04T08:00:31Z
dc.date.available2015-03-04T08:00:31Z
dc.date.issued2012pl
dc.date.openaccess0
dc.description.accesstimew momencie opublikowania
dc.description.number7pl
dc.description.physical1123-1134pl
dc.description.versionostateczna wersja wydawcy
dc.description.volume17pl
dc.identifier.doi10.1007/s00775-012-0926-8pl
dc.identifier.eissn1432-1327pl
dc.identifier.issn0949-8257pl
dc.identifier.projectROD UJ / Ppl
dc.identifier.urihttp://ruj.uj.edu.pl/xmlui/handle/item/3508
dc.identifier.weblinkhttps://link.springer.com/content/pdf/10.1007%2Fs00775-012-0926-8.pdfpl
dc.languageengpl
dc.language.containerengpl
dc.rightsUdzielam licencji. Uznanie autorstwa 4.0 Międzynarodowa*
dc.rights.licenceCC-BY
dc.rights.urihttp://creativecommons.org/licenses/by/4.0/legalcode.pl*
dc.share.typeinne
dc.subject.enureasepl
dc.subject.enstopped flowpl
dc.subject.encatalytic mechanismpl
dc.subject.entemperature and pressure dependencepl
dc.subject.enthermodynamic and activation parameterspl
dc.subtypeArticlepl
dc.titleTemperature- and pressure-dependent stopped-flow kinetic studies of jack bean urease : implications for the catalytic mechanismpl
dc.title.journalJBIC. Journal of Biological Inorganic Chemistrypl
dc.typeJournalArticlepl
dspace.entity.typePublication

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