Structural analysis of the SAM domain of the Arabidopsis mitochondrial tRNA import receptor

2024
journal article
article
1
dc.abstract.enMitochondria are membrane-bound organelles of endosymbiotic origin with limited protein-coding capacity. The import of nuclear-encoded proteins and nucleic acids is required and essential for maintaining organelle mass, number, and activity. As plant mitochondria do not encode all the necessary tRNA types required, the import of cytosolic tRNA is vital for organelle maintenance. Recently, two mitochondrial outer membrane proteins, named Tric1 and Tric2, for tRNA import component, were shown to be involved in the import of cytosolic tRNA. Tric1/2 binds tRNAala via conserved residues in the C-terminal Sterile Alpha Motif (SAM) domain. Here we report the X-ray crystal structure of the Tric1 SAM domain. We identified the ability of the SAM domain to form a helical superstructure with six monomers per helical turn and key amino acid residues responsible for its formation. We determined that the oligomerization of the Tric1 SAM domain may play a role in protein function whereby mutation of Gly241 introducing a larger side chain at this position disrupted the oligomer and resulted in the loss of RNA binding capability. Furthermore, complementation of Arabidopsis thaliana Tric1/2 knockout lines with a mutated Tric1 failed to restore the defective plant phenotype. AlphaFold2 structure prediction of both the SAM domain and Tric1 support a cyclic pentameric or hexameric structure. In the case of a hexameric structure, a pore of sufficient dimensions to transfer tRNA across the mitochondrial membrane is observed. Our results highlight the importance of oligomerization of Tric1 for protein function.
dc.contributor.authorOlasz, Bence - 479929
dc.contributor.authorSmithers, Luke
dc.contributor.authorEvans, Genevieve L.
dc.contributor.authorAnandan, Anandhi
dc.contributor.authorMurcha, Monika W.
dc.contributor.authorVrielink, Alice
dc.date.accessioned2025-03-14T14:39:21Z
dc.date.available2025-03-14T14:39:21Z
dc.date.createdat2025-03-12T12:31:43Zen
dc.date.issued2024
dc.date.openaccess0
dc.description.accesstimew momencie opublikowania
dc.description.additionalBibliogr.
dc.description.number5
dc.description.versionostateczna wersja wydawcy
dc.description.volume300
dc.identifier.articleid107258
dc.identifier.doi10.1016/j.jbc.2024.107258
dc.identifier.eissn1083-351X
dc.identifier.issn0021-9258
dc.identifier.urihttps://ruj.uj.edu.pl/handle/item/550236
dc.languageeng
dc.language.containereng
dc.rightsUdzielam licencji. Uznanie autorstwa 4.0 Międzynarodowa
dc.rights.licenceCC-BY
dc.rights.urihttp://creativecommons.org/licenses/by/4.0/legalcode.pl
dc.share.typeotwarte czasopismo
dc.subject.enmitochondria
dc.subject.entRNA
dc.subject.enimport
dc.subject.entric1
dc.subject.enSAM domain
dc.subject.enoligomerization
dc.subject.ensuperhelix
dc.subject.enprotein structure
dc.subject.enPRAT
dc.subject.endomain
dc.subtypeArticle
dc.titleStructural analysis of the SAM domain of the Arabidopsis mitochondrial tRNA import receptor
dc.title.journalJournal of Biological Chemistry
dc.typeJournalArticle
dspace.entity.typePublicationen
dc.abstract.en
Mitochondria are membrane-bound organelles of endosymbiotic origin with limited protein-coding capacity. The import of nuclear-encoded proteins and nucleic acids is required and essential for maintaining organelle mass, number, and activity. As plant mitochondria do not encode all the necessary tRNA types required, the import of cytosolic tRNA is vital for organelle maintenance. Recently, two mitochondrial outer membrane proteins, named Tric1 and Tric2, for tRNA import component, were shown to be involved in the import of cytosolic tRNA. Tric1/2 binds tRNAala via conserved residues in the C-terminal Sterile Alpha Motif (SAM) domain. Here we report the X-ray crystal structure of the Tric1 SAM domain. We identified the ability of the SAM domain to form a helical superstructure with six monomers per helical turn and key amino acid residues responsible for its formation. We determined that the oligomerization of the Tric1 SAM domain may play a role in protein function whereby mutation of Gly241 introducing a larger side chain at this position disrupted the oligomer and resulted in the loss of RNA binding capability. Furthermore, complementation of Arabidopsis thaliana Tric1/2 knockout lines with a mutated Tric1 failed to restore the defective plant phenotype. AlphaFold2 structure prediction of both the SAM domain and Tric1 support a cyclic pentameric or hexameric structure. In the case of a hexameric structure, a pore of sufficient dimensions to transfer tRNA across the mitochondrial membrane is observed. Our results highlight the importance of oligomerization of Tric1 for protein function.
dc.contributor.author
Olasz, Bence - 479929
dc.contributor.author
Smithers, Luke
dc.contributor.author
Evans, Genevieve L.
dc.contributor.author
Anandan, Anandhi
dc.contributor.author
Murcha, Monika W.
dc.contributor.author
Vrielink, Alice
dc.date.accessioned
2025-03-14T14:39:21Z
dc.date.available
2025-03-14T14:39:21Z
dc.date.createdaten
2025-03-12T12:31:43Z
dc.date.issued
2024
dc.date.openaccess
0
dc.description.accesstime
w momencie opublikowania
dc.description.additional
Bibliogr.
dc.description.number
5
dc.description.version
ostateczna wersja wydawcy
dc.description.volume
300
dc.identifier.articleid
107258
dc.identifier.doi
10.1016/j.jbc.2024.107258
dc.identifier.eissn
1083-351X
dc.identifier.issn
0021-9258
dc.identifier.uri
https://ruj.uj.edu.pl/handle/item/550236
dc.language
eng
dc.language.container
eng
dc.rights
Udzielam licencji. Uznanie autorstwa 4.0 Międzynarodowa
dc.rights.licence
CC-BY
dc.rights.uri
http://creativecommons.org/licenses/by/4.0/legalcode.pl
dc.share.type
otwarte czasopismo
dc.subject.en
mitochondria
dc.subject.en
tRNA
dc.subject.en
import
dc.subject.en
tric1
dc.subject.en
SAM domain
dc.subject.en
oligomerization
dc.subject.en
superhelix
dc.subject.en
protein structure
dc.subject.en
PRAT
dc.subject.en
domain
dc.subtype
Article
dc.title
Structural analysis of the SAM domain of the Arabidopsis mitochondrial tRNA import receptor
dc.title.journal
Journal of Biological Chemistry
dc.type
JournalArticle
dspace.entity.typeen
Publication

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