Expansion of a SARS-CoV-2 Delta variant with an 872 nt deletion encompassing ORF7a, ORF7b and ORF8 : Poland, July to August 2021

2021
journal article
article
16
cris.lastimport.wos2024-04-10T00:24:47Z
dc.abstract.enRoutine genomic surveillance on samples from COVID-19 patients collected in Poland during summer 2021 revealed the emergence of a SARS-CoV-2 Delta variant with a large 872 nt deletion. This change, confirmed by Sanger and deep sequencing, causes complete loss of ORF7a, ORF7b, and ORF8 genes. The index case carrying the deletion is unknown. The standard pipeline for sequencing may mask this deletion with a long stretch of N’s. Effects of this deletion on phenotype or immune evasion needs further study.pl
dc.affiliationPion Prorektora ds. badań naukowych i funduszy strukturalnych : Małopolskie Centrum Biotechnologiipl
dc.contributor.authorMazur-Panasiuk, Natalia - 441669 pl
dc.contributor.authorRabalski, Łukaszpl
dc.contributor.authorGromowski, Tomasz - 394359 pl
dc.contributor.authorNowicki, Grzegorzpl
dc.contributor.authorKowalski, Michał - 237843 pl
dc.contributor.authorWydmański, Witold - 429281 pl
dc.contributor.authorSzulc, Piotrpl
dc.contributor.authorKosinski, Maciejpl
dc.contributor.authorGackowska, Karolinapl
dc.contributor.authorDrweska-Matelska, Nataliapl
dc.contributor.authorGrabowski, Jakubpl
dc.contributor.authorPiotrowska-Mietelska, Annapl
dc.contributor.authorSzewczyk, Boguslawpl
dc.contributor.authorBienkowska-Szewczyk, Krystynapl
dc.contributor.authorSwadzba, Jakubpl
dc.contributor.authorŁabaj, Paweł - 393494 pl
dc.contributor.authorGrzybek, Maciejpl
dc.contributor.authorPyrć, Krzysztof - 161470 pl
dc.date.accessioned2021-12-07T08:35:46Z
dc.date.available2021-12-07T08:35:46Z
dc.date.issued2021pl
dc.date.openaccess0
dc.description.accesstimew momencie opublikowania
dc.description.number39pl
dc.description.versionostateczna wersja wydawcy
dc.description.volume26pl
dc.identifier.articleid2100902pl
dc.identifier.doi10.2807/1560-7917.ES.2021.26.39.2100902pl
dc.identifier.eissn1560-7917pl
dc.identifier.urihttps://ruj.uj.edu.pl/xmlui/handle/item/284728
dc.languageengpl
dc.language.containerengpl
dc.rightsUdzielam licencji. Uznanie autorstwa 4.0 Międzynarodowa*
dc.rights.licenceCC-BY
dc.rights.urihttp://creativecommons.org/licenses/by/4.0/legalcode.pl*
dc.share.typeotwarte czasopismo
dc.subject.enSARS-CoV-2pl
dc.subject.enORF7apl
dc.subtypeArticlepl
dc.titleExpansion of a SARS-CoV-2 Delta variant with an 872 nt deletion encompassing ORF7a, ORF7b and ORF8 : Poland, July to August 2021pl
dc.title.journalEurosurveillancepl
dc.typeJournalArticlepl
dspace.entity.typePublication
cris.lastimport.wos
2024-04-10T00:24:47Z
dc.abstract.enpl
Routine genomic surveillance on samples from COVID-19 patients collected in Poland during summer 2021 revealed the emergence of a SARS-CoV-2 Delta variant with a large 872 nt deletion. This change, confirmed by Sanger and deep sequencing, causes complete loss of ORF7a, ORF7b, and ORF8 genes. The index case carrying the deletion is unknown. The standard pipeline for sequencing may mask this deletion with a long stretch of N’s. Effects of this deletion on phenotype or immune evasion needs further study.
dc.affiliationpl
Pion Prorektora ds. badań naukowych i funduszy strukturalnych : Małopolskie Centrum Biotechnologii
dc.contributor.authorpl
Mazur-Panasiuk, Natalia - 441669
dc.contributor.authorpl
Rabalski, Łukasz
dc.contributor.authorpl
Gromowski, Tomasz - 394359
dc.contributor.authorpl
Nowicki, Grzegorz
dc.contributor.authorpl
Kowalski, Michał - 237843
dc.contributor.authorpl
Wydmański, Witold - 429281
dc.contributor.authorpl
Szulc, Piotr
dc.contributor.authorpl
Kosinski, Maciej
dc.contributor.authorpl
Gackowska, Karolina
dc.contributor.authorpl
Drweska-Matelska, Natalia
dc.contributor.authorpl
Grabowski, Jakub
dc.contributor.authorpl
Piotrowska-Mietelska, Anna
dc.contributor.authorpl
Szewczyk, Boguslaw
dc.contributor.authorpl
Bienkowska-Szewczyk, Krystyna
dc.contributor.authorpl
Swadzba, Jakub
dc.contributor.authorpl
Łabaj, Paweł - 393494
dc.contributor.authorpl
Grzybek, Maciej
dc.contributor.authorpl
Pyrć, Krzysztof - 161470
dc.date.accessioned
2021-12-07T08:35:46Z
dc.date.available
2021-12-07T08:35:46Z
dc.date.issuedpl
2021
dc.date.openaccess
0
dc.description.accesstime
w momencie opublikowania
dc.description.numberpl
39
dc.description.version
ostateczna wersja wydawcy
dc.description.volumepl
26
dc.identifier.articleidpl
2100902
dc.identifier.doipl
10.2807/1560-7917.ES.2021.26.39.2100902
dc.identifier.eissnpl
1560-7917
dc.identifier.uri
https://ruj.uj.edu.pl/xmlui/handle/item/284728
dc.languagepl
eng
dc.language.containerpl
eng
dc.rights*
Udzielam licencji. Uznanie autorstwa 4.0 Międzynarodowa
dc.rights.licence
CC-BY
dc.rights.uri*
http://creativecommons.org/licenses/by/4.0/legalcode.pl
dc.share.type
otwarte czasopismo
dc.subject.enpl
SARS-CoV-2
dc.subject.enpl
ORF7a
dc.subtypepl
Article
dc.titlepl
Expansion of a SARS-CoV-2 Delta variant with an 872 nt deletion encompassing ORF7a, ORF7b and ORF8 : Poland, July to August 2021
dc.title.journalpl
Eurosurveillance
dc.typepl
JournalArticle
dspace.entity.type
Publication

* The migration of download and view statistics prior to the date of April 8, 2024 is in progress.

Views
15
Views per month
Views per city
Krakow
8
Ashburn
3
Wroclaw
2
Dublin
1