Identification and inhibition of PIN1-NRF2 protein–protein interactions through computational and biophysical approaches

2025
journal article
article
dc.abstract.enNRF2 is a transcription factor responsible for coordinating the expression of over a thousand cytoprotective genes. Although NRF2 is constitutively expressed, its stability is modulated by the redox-sensitive protein KEAP1 and other conditional binding partner regulators. The new era of NRF2 research has highlighted the cooperation between NRF2 and PIN1 in modifying its cytoprotective effect. Despite numerous studies, the understanding of the PIN1-NRF2 interaction remains limited. Herein, we described the binding interaction of PIN1 and three different 14-mer long phospho-peptides mimicking NRF2 protein using computer-based, biophysical, and biochemical approaches. According to our computational analyses, the residues positioned in the WW domain of PIN1 (Ser16, Arg17, Ser18, Tyr23, Ser32, Gln33, and Trp34) were found to be crucial for PIN1-NRF2 interactions. Biophysical FP assays were used to verify the computational prediction. The data demonstrated that Pintide, a peptide predominantly interacting with the PIN1 WW-domain, led to a significant reduction in the binding affinity of the NRF2 mimicking peptides. Moreover, we evaluated the impact of known PIN1 inhibitors (juglone, KPT-6566, and EGCG) on the PIN1-NRF2 interaction. Among the inhibitors, KPT-6566 showed the most potent inhibitory effect on PIN1-NRF2 interaction within an $IC_{50}$ range of 0.3–1.4 µM. Furthermore, our mass spectrometry analyses showed that KPT-6566 appeared to covalently modify PIN1 via conjugate addition, rather than disulfide exchange of the sulfonyl-acetate moiety. Altogether, such inhibitors would also be highly valuable molecular probes for further investigation of PIN1 regulation of NRF2 in the cellular context and potentially pave the way for drug molecules that specifically inhibit the cytoprotective effects of NRF2 in cancer.
dc.affiliationWydział Biochemii, Biofizyki i Biotechnologii : Zakład Biotechnologii Medycznej
dc.contributor.authorOzleyen, Adem
dc.contributor.authorDuran, Gizem Nur
dc.contributor.authorDonmez, Serhat
dc.contributor.authorOzbil, Mehmet
dc.contributor.authorDoveston, Richard G.
dc.contributor.authorTumer, Tugba Boyunegmez
dc.date.accessioned2025-03-21T08:27:59Z
dc.date.available2025-03-21T08:27:59Z
dc.date.createdat2025-03-17T13:22:03Zen
dc.date.issued2025
dc.date.openaccess0
dc.description.accesstimew momencie opublikowania
dc.description.additionalBibliogr.
dc.description.versionostateczna wersja wydawcy
dc.description.volume15
dc.identifier.articleid8907
dc.identifier.doi10.1038/s41598-025-89342-0
dc.identifier.issn2045-2322
dc.identifier.urihttps://ruj.uj.edu.pl/handle/item/550529
dc.languageeng
dc.language.containereng
dc.rightsUdzielam licencji. Uznanie autorstwa 4.0 Międzynarodowa
dc.rights.licenceCC-BY
dc.rights.urihttp://creativecommons.org/licenses/by/4.0/legalcode.pl
dc.share.typeotwarte czasopismo
dc.subtypeArticle
dc.titleIdentification and inhibition of PIN1-NRF2 protein–protein interactions through computational and biophysical approaches
dc.title.journalScientific Reports
dc.typeJournalArticle
dspace.entity.typePublicationen
dc.abstract.en
NRF2 is a transcription factor responsible for coordinating the expression of over a thousand cytoprotective genes. Although NRF2 is constitutively expressed, its stability is modulated by the redox-sensitive protein KEAP1 and other conditional binding partner regulators. The new era of NRF2 research has highlighted the cooperation between NRF2 and PIN1 in modifying its cytoprotective effect. Despite numerous studies, the understanding of the PIN1-NRF2 interaction remains limited. Herein, we described the binding interaction of PIN1 and three different 14-mer long phospho-peptides mimicking NRF2 protein using computer-based, biophysical, and biochemical approaches. According to our computational analyses, the residues positioned in the WW domain of PIN1 (Ser16, Arg17, Ser18, Tyr23, Ser32, Gln33, and Trp34) were found to be crucial for PIN1-NRF2 interactions. Biophysical FP assays were used to verify the computational prediction. The data demonstrated that Pintide, a peptide predominantly interacting with the PIN1 WW-domain, led to a significant reduction in the binding affinity of the NRF2 mimicking peptides. Moreover, we evaluated the impact of known PIN1 inhibitors (juglone, KPT-6566, and EGCG) on the PIN1-NRF2 interaction. Among the inhibitors, KPT-6566 showed the most potent inhibitory effect on PIN1-NRF2 interaction within an $IC_{50}$ range of 0.3–1.4 µM. Furthermore, our mass spectrometry analyses showed that KPT-6566 appeared to covalently modify PIN1 via conjugate addition, rather than disulfide exchange of the sulfonyl-acetate moiety. Altogether, such inhibitors would also be highly valuable molecular probes for further investigation of PIN1 regulation of NRF2 in the cellular context and potentially pave the way for drug molecules that specifically inhibit the cytoprotective effects of NRF2 in cancer.
dc.affiliation
Wydział Biochemii, Biofizyki i Biotechnologii : Zakład Biotechnologii Medycznej
dc.contributor.author
Ozleyen, Adem
dc.contributor.author
Duran, Gizem Nur
dc.contributor.author
Donmez, Serhat
dc.contributor.author
Ozbil, Mehmet
dc.contributor.author
Doveston, Richard G.
dc.contributor.author
Tumer, Tugba Boyunegmez
dc.date.accessioned
2025-03-21T08:27:59Z
dc.date.available
2025-03-21T08:27:59Z
dc.date.createdaten
2025-03-17T13:22:03Z
dc.date.issued
2025
dc.date.openaccess
0
dc.description.accesstime
w momencie opublikowania
dc.description.additional
Bibliogr.
dc.description.version
ostateczna wersja wydawcy
dc.description.volume
15
dc.identifier.articleid
8907
dc.identifier.doi
10.1038/s41598-025-89342-0
dc.identifier.issn
2045-2322
dc.identifier.uri
https://ruj.uj.edu.pl/handle/item/550529
dc.language
eng
dc.language.container
eng
dc.rights
Udzielam licencji. Uznanie autorstwa 4.0 Międzynarodowa
dc.rights.licence
CC-BY
dc.rights.uri
http://creativecommons.org/licenses/by/4.0/legalcode.pl
dc.share.type
otwarte czasopismo
dc.subtype
Article
dc.title
Identification and inhibition of PIN1-NRF2 protein–protein interactions through computational and biophysical approaches
dc.title.journal
Scientific Reports
dc.type
JournalArticle
dspace.entity.typeen
Publication
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