Internal force field in selected proteins

2019
journal article
article
2
cris.lastimport.scopus2024-04-07T14:49:23Z
cris.lastimport.wos2024-04-10T02:09:31Z
dc.abstract.enThe fuzzy oil drop model suggests that the tertiary conformation of a protein – particularly a globular one - can be likened to a spherical micelle. During the folding process, hydrophilic residues are exposed on the surface, while hydrophobic residues are retained inside the protein. The resulting hydrophobicity distribution can be mathematically modeled as a 3D Gaussian. The fuzzy oil drop model is strikingly effective in explaining the properties of type II antifreeze proteins and fast-folding proteins, as well as a vast majority of autonomous protein domains. This work aims to determine whether similar mechanisms apply to other types of nonbonding interactions. Our analysis indicates that electrostatic and van der Waals forces do not conform to the Gaussian pattern. The study involves a reference protein (titin) which shows a high agreement between the observed distribution of hydrophobicity and the theoretical (Gaussian) distribution, a selection of amyloid structures derived from the Protein Data Bank, as well as transthyretin - a protein known for its susceptibility to amyloid transformation.pl
dc.affiliationWydział Lekarski : Zakład Bioinformatyki i Telemedycynypl
dc.cm.date2020-12-02
dc.cm.id96935
dc.contributor.authorPtak-Kaczor, Magdalena - 222421 pl
dc.contributor.authorBanach, Mateusz - 103003 pl
dc.contributor.authorKonieczny, Leszekpl
dc.contributor.authorRoterman-Konieczna, Irena - 133298 pl
dc.date.accession2020-06-18pl
dc.date.accessioned2020-12-02T10:22:41Zpl
dc.date.available2020-12-02T10:22:41Zpl
dc.date.issued2019pl
dc.date.openaccess0
dc.description.accesstimew momencie opublikowania
dc.description.number4pl
dc.description.physical451-458pl
dc.description.points40pl
dc.description.versionostateczna wersja wydawcy
dc.description.volume66pl
dc.identifier.doi10.18388/abp.2019_2865pl
dc.identifier.eissn1734-154Xpl
dc.identifier.issn0001-527Xpl
dc.identifier.projectROD UJ / OPpl
dc.identifier.urihttps://ruj.uj.edu.pl/xmlui/handle/item/256515
dc.identifier.weblinkhttps://ojs.ptbioch.edu.pl/index.php/abp/article/view/2865pl
dc.languageengpl
dc.language.containerengpl
dc.rightsUdzielam licencji. Uznanie autorstwa - Na tych samych warunkach 4.0 Międzynarodowa*
dc.rights.licenceCC-BY-SA
dc.rights.urihttp://creativecommons.org/licenses/by-sa/4.0/legalcode.pl*
dc.share.typeotwarte czasopismo
dc.subject.enhydrophobicitypl
dc.subject.enamyloidpl
dc.subject.eninternal force fieldpl
dc.subject.enexternal force fieldpl
dc.subtypeArticlepl
dc.titleInternal force field in selected proteinspl
dc.title.journalActa Biochimica Polonicapl
dc.typeJournalArticlepl
dspace.entity.typePublication
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