The involvement of RIPK4 in TNF--stimulated IL-6 and IL-8 production by melanoma cells

2024
journal article
article
dc.abstract.enPurpose The receptor-interacting protein kinase (RIPK4) has an oncogenic function in melanoma, regulates NF-$\kappa$B and Wnt/$\beta$-catenin pathways, and is sensitive to the BRAF inhibitors: vemurafenib and dabrafenib which lead to its decreased level. As its role in melanoma remains not fully understood, we examined the effects of its downregulation on the transcriptomic profile of melanoma. Methods Applying RNA-seq, we revealed global alterations in the transcriptome of WM266.4 cells with RIPK4 silencing. Functional partners of RIPK4 were evaluated using STRING and GeneMANIA databases. Cells with transient knockdown (via siRNA) and stable knockout (via CRISPR/Cas9) of RIPK4 were stimulated with TNF-$\alpha$. The expression levels of selected proteins were assessed using Western blot, ELISA, and qPCR. Results Global analysis of gene expression changes indicates a complex role for RIPK4 in regulating adhesion, migration, proliferation, and inflammatory processes in melanoma cells. Our study highlights potential functional partners of RIPK4 such as BIRC3, TNF-$\alpha$ receptors, and MAP2K6. Data from RIPK4 knockout cells suggest a putative role for RIPK4 in modulating TNF-$\alpha$-induced production of IL-8 and IL-6 through two distinct signaling pathways—BIRC3/NF-$\kappa$B and p38/MAPK. Furthermore, increased serum TNF-$\alpha$ levels and the correlation of RIPK4 with NF-$\kappa$B were revealed in melanoma patients. Conclusion These data reveal a complex role for RIPK4 in regulating the immune signaling network in melanoma cells and suggest that this kinase may represent an alternative target for melanoma-targeted adjuvant therapy.
dc.affiliationSzkoła Doktorska Nauk Ścisłych i Przyrodniczych
dc.affiliationWydział Biochemii, Biofizyki i Biotechnologii : Zakład Biofizyki i Biologii Nowotworów
dc.contributor.authorMadej, Ewelina - 251670
dc.contributor.authorLisek, Anna
dc.contributor.authorBrożyna, Anna A.
dc.contributor.authorCierniak, Agnieszka
dc.contributor.authorWroński, Norbert - 370553
dc.contributor.authorDeptula, Milena
dc.contributor.authorWardowska, Anna
dc.contributor.authorWolnicka-Głubisz, Agnieszka - 132724
dc.date.accessioned2024-05-09T06:49:00Z
dc.date.available2024-05-09T06:49:00Z
dc.date.issued2024
dc.date.openaccess0
dc.description.accesstimew momencie opublikowania
dc.description.additionalBibliogr.
dc.description.number4
dc.description.versionostateczna wersja wydawcy
dc.description.volume150
dc.identifier.articleid209
dc.identifier.doi10.1007/s00432-024-05732-3
dc.identifier.issn0171-5216
dc.identifier.urihttps://ruj.uj.edu.pl/handle/item/339245
dc.languageeng
dc.language.containereng
dc.rightsUdzielam licencji. Uznanie autorstwa 4.0 Międzynarodowa
dc.rights.licenceCC-BY
dc.rights.urihttp://creativecommons.org/licenses/by/4.0/legalcode.pl
dc.share.typeinne
dc.subject.enRNA-seq
dc.subject.enRIPK4
dc.subject.enmelanoma
dc.subject.encytokines
dc.subject.enBIRC3
dc.subject.entranscriptome
dc.subject.enp-38
dc.subtypeArticle
dc.titleThe involvement of RIPK4 in TNF-$\alpha$-stimulated IL-6 and IL-8 production by melanoma cells
dc.title.journalJournal of Cancer Research and Clinical Oncology
dc.typeJournalArticle
dspace.entity.typePublicationen
dc.abstract.en
Purpose The receptor-interacting protein kinase (RIPK4) has an oncogenic function in melanoma, regulates NF-$\kappa$B and Wnt/$\beta$-catenin pathways, and is sensitive to the BRAF inhibitors: vemurafenib and dabrafenib which lead to its decreased level. As its role in melanoma remains not fully understood, we examined the effects of its downregulation on the transcriptomic profile of melanoma. Methods Applying RNA-seq, we revealed global alterations in the transcriptome of WM266.4 cells with RIPK4 silencing. Functional partners of RIPK4 were evaluated using STRING and GeneMANIA databases. Cells with transient knockdown (via siRNA) and stable knockout (via CRISPR/Cas9) of RIPK4 were stimulated with TNF-$\alpha$. The expression levels of selected proteins were assessed using Western blot, ELISA, and qPCR. Results Global analysis of gene expression changes indicates a complex role for RIPK4 in regulating adhesion, migration, proliferation, and inflammatory processes in melanoma cells. Our study highlights potential functional partners of RIPK4 such as BIRC3, TNF-$\alpha$ receptors, and MAP2K6. Data from RIPK4 knockout cells suggest a putative role for RIPK4 in modulating TNF-$\alpha$-induced production of IL-8 and IL-6 through two distinct signaling pathways—BIRC3/NF-$\kappa$B and p38/MAPK. Furthermore, increased serum TNF-$\alpha$ levels and the correlation of RIPK4 with NF-$\kappa$B were revealed in melanoma patients. Conclusion These data reveal a complex role for RIPK4 in regulating the immune signaling network in melanoma cells and suggest that this kinase may represent an alternative target for melanoma-targeted adjuvant therapy.
dc.affiliation
Szkoła Doktorska Nauk Ścisłych i Przyrodniczych
dc.affiliation
Wydział Biochemii, Biofizyki i Biotechnologii : Zakład Biofizyki i Biologii Nowotworów
dc.contributor.author
Madej, Ewelina - 251670
dc.contributor.author
Lisek, Anna
dc.contributor.author
Brożyna, Anna A.
dc.contributor.author
Cierniak, Agnieszka
dc.contributor.author
Wroński, Norbert - 370553
dc.contributor.author
Deptula, Milena
dc.contributor.author
Wardowska, Anna
dc.contributor.author
Wolnicka-Głubisz, Agnieszka - 132724
dc.date.accessioned
2024-05-09T06:49:00Z
dc.date.available
2024-05-09T06:49:00Z
dc.date.issued
2024
dc.date.openaccess
0
dc.description.accesstime
w momencie opublikowania
dc.description.additional
Bibliogr.
dc.description.number
4
dc.description.version
ostateczna wersja wydawcy
dc.description.volume
150
dc.identifier.articleid
209
dc.identifier.doi
10.1007/s00432-024-05732-3
dc.identifier.issn
0171-5216
dc.identifier.uri
https://ruj.uj.edu.pl/handle/item/339245
dc.language
eng
dc.language.container
eng
dc.rights
Udzielam licencji. Uznanie autorstwa 4.0 Międzynarodowa
dc.rights.licence
CC-BY
dc.rights.uri
http://creativecommons.org/licenses/by/4.0/legalcode.pl
dc.share.type
inne
dc.subject.en
RNA-seq
dc.subject.en
RIPK4
dc.subject.en
melanoma
dc.subject.en
cytokines
dc.subject.en
BIRC3
dc.subject.en
transcriptome
dc.subject.en
p-38
dc.subtype
Article
dc.title
The involvement of RIPK4 in TNF-$\alpha$-stimulated IL-6 and IL-8 production by melanoma cells
dc.title.journal
Journal of Cancer Research and Clinical Oncology
dc.type
JournalArticle
dspace.entity.typeen
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